Tip of the Week: BioExtract

submitted by: OpenHelix

This week's tip is on BioExtract. See the blog post more information about BioExtract and other similar tools

Tip of the Week: Galaxy Pages

submitted by: OpenHelix

Find more here about this tip: http://wp.me/pDP1I-1mI This tip of the week introduces you to Galaxy Pages, an annotation and description creator for genomics analysis

Installing and using the Drupal Bioinformatics Software Bench

linked profile(s): alpapan
submitted by: alpapan
The Bioinformatic Software Bench (BSB) for Drupal allows for a rapid and secure deployment of bioinformatic software. The BLAST, InterProScan, SSAHA2 and annot8r software are provided by default and plugins for new software can be readily written. An innovative graphical user interface guides both end-user and administration of the software, including the secure provision of pre-publication datasets. It is available from http://drupal.org/project/biosoftware_bench or...

Tip of the Week: Gaggle Genome Browser

submitted by: OpenHelix

In this tip, I illustrate some interactions with the new Gaggle browser. See http://blog.openhelix.eu/?p=4862 for links and details about Gaggle.

Tip of the Week: YeastMine

submitted by: OpenHelix

For more information about this resource see our blog post at http://blog.openhelix.eu/?p=4968. In this tip we introduce YeastMine (beta) and show you how to make gene lists and link to other model organism information using InterMine's interoperability.

Mark Roskey on "Sample Prep, Workflow Automation and Advanced Nucleic Acid Fractionation for Next Generation Sequencing"

submitted by: JGI

Mark Roskey of Caliper LifeSciences discusses how the company's technologies fit into the next generation sequencing workflow on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Finishing Panel at SFAF

submitted by: JGI

From left to right: Dibyendu Kumar of the University of Florida, Christian Buhay of Baylor College of Medicine, Andries van Tonder of Wellcome Sanger Trust Institute, Anna Montmayeur of the Broad Institute and Karen Davenport of Los Alamos National Laboratory at the Finishing forum on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Andrew Bradbury on "Towards experimental annotation of genes by high throughput sequencing"

submitted by: JGI

Andrew Bradbury of Los Alamos National Laboratory discusses turning annotation into a sequencing pipeline on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Jeff Martin on "Rnnotator assembly pipeline"

submitted by: JGI

Jeff Martin of the DOE Joint Genome Institute discusses a de novo transcriptome assembly pipeline from short RNA-Seq reads on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Jim Bristow delivers DOE JGI welcome remarks

submitted by: JGI

Jim Bristow, Deputy Director of Programs at the DOE Joint Genome Institute, discusses the impact of advances in sequencing technologies on large genome centers on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.