Rapid Proteomics Analysis Algorithm Development Using Thermo Scientific Proteome Discoverer Software

submitted by: Chrom Solutions

Iman Mohtashemi presents his scientific poster about node-based framework for proteomics data processing using Thermo Scientific Proteome Discoverer software and a hybrid ion trap-OribtrapTM mass spectrometer. This allows rapid deployment of custom algorithms without the need to develop graphical user interfaces and other input/output infrastructure saving you time.

Higher Resolution Improves Top-Down Protein Identification on Orbitrap Mass Spec for Large Proteins

submitted by: Chrom Solutions

David Horn presents his scientific poster on the necessity for high mass resolution (>200,000) for confidence in identification of proteins above 40kDa using yeast enolase. The comparison between various resolution settings for both direct infusion and LC-MS/MS data are shown, using the Thermo Scientific Orbitrap mass spectrometer to improve confidence and sequence coverage for identification of larger proteins.

Ze Peng (DOE JGI) at the 2012 SFAF Meeting

submitted by: JGI

Ze Peng on "Fosmid Cre-LoxP Inverse PCR Paired-End (Fosmid CLIP-PE), A Novel Method for Constructing Fosmid Pair-End Library" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

Bruce Walker (Broad Institute) at the 2012 SFAF Meeting

submitted by: JGI

Bruce Walker on "Pilon: Automated Assembly Improvement Software" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

David Gordon (University of Washington) at the 2012 SFAF Meeting

submitted by: JGI

David Gordon on "Consed with Next-Gen Data and BAM Files" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

Xun Xu (BGI) at the 2012 SFAF Meeting

submitted by: JGI

Xun Xu on "Resolving Cancer Heterogeneity by Single Cell Sequencing" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

Tip of the Week: Browsing Butterflies with GBrowse and Ensembl

submitted by: OpenHelix

Community genome browsers are important tools to supplement publications. For more details and links visit http://blog.openhelix.eu/?p=12182 .

Surya Saha (Cornell University) at the 2012 SFAF Meeting

submitted by: JGI

Surya Saha on "Endosymbiont hunting in the metagenome of Asian citrus psyllid (Diaphorina citri)" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

Michael FitzGerald (Broad Institute) at the 2012 SFAF Meeting

submitted by: JGI

Michael FitzGerald on "A rapid whole genome sequencing and analysis system supporting genomic epidemiology" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

Catherine Campbell (Noblis) at the 2012 SFAF Meeting

submitted by: JGI

Catherine Campbell on "Finishing and Special Motifs: Lessons learned from CRISPR analysis using next-generation draft sequences" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.