GSC 12 Session IV: MIxS

submitted by: psterk1
The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 ( http://gensc.org/gc_wiki/index.php/GSC_12 ). Lynn Schriml (University of Maryland) and Andreas Wilke (Argonne) - Extending MIxS for the Indoor Environment Anjanette Johnston (NCBI GenBank) - Metadata and GenBank: Submission Challenges and New Features Chris Hunter (ENA) - EBI, ENA, SRA, GSC, MIxS and EMG Boyke Bunk (DSMZ) - MIxS-ing...

GSC 12 Session III: Standards Organisations

submitted by: psterk1
The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 ( http://gensc.org/gc_wiki/index.php/GSC_12 ). Barry Smith (University of Buffalo): The World Wide Web Consortium (W3C) Daniele Gerundino (ISO Strategic Adviser to the Secretary-General): ISO Standards Martin Klopfer (OGC): The Open Geospatial Consortium (OGC) Susanna Sansone (University of Oxford): BioSharing

GSC 12 Session II (cont'd): Biodiversity Reports

submitted by: psterk1

The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 (http://gensc.org/gc_wiki/index.php/GSC_12).

Reports from Biodiversity breakout groups

Welcome and background of GSC 12

submitted by: psterk1
The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 ( http://gensc.org/gc_wiki/index.php/GSC_12 ). Dawn Field, "The Genomic Standards Consortium" Pelin Yilmaz, "MIxS and Compliance Working Group" Pier Luigi Buttigieg, "EnvO and Ontologies" Wim de Smet, "Genomic Rosetta Stone" Renzo Kottmann, "GCDML and Developer Working Group" Jeff Grethe, "M5" Robert Robbins, "GSC Biodiversity...

MICW - Single Cells and Metagenomes: Doug Rusch

submitted by: JGI

JCVI's Doug Rusch on "Marriage or Civil Unions for Single Cells and Metagenomes" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - High-performance Computing: Brooklin Gore

submitted by: JGI

Morgridge Institute for Research's Brooklin Gore on "High Throughput Computing Impact on Meta Genomics" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - High-performance Computing: Narayan Desai

submitted by: JGI

Argonne National Lab's Narayan Desai on "Scaling MG-RAST to Terabases" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Metagenome Data Integration, Data Storage and Retrieval: Victor Markowitz

submitted by: JGI

DOE JGI's Victor Markowitz gives an overview of IMG challenges at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Scalability of Comparative Analysis, Novel Algorithms and Tools: Paramvir Dehal

submitted by: JGI

Berkeley Lab's Paramvir Dehal on "Managing and Storing large Datasets in MicrobesOnline, metaMicrobesOnline and the DOE Knowledgebase" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Scalability of Comparative Analysis, Novel Algorithms and Tools: Weizhong Li

submitted by: JGI

San Diego Supercomputer Center's Weizhong Li on "Effective Analysis of NGS Metagenomic Data with Ultra-fast Clustering Algorithms" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.