BioVeL part 1: Presentations

submitted by: psterk1
Description: BioVeL satellite meeting held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 27, 2011 ( http://gensc.org/gc_wiki/index.php/GSC_12 ). Biodiversity Virtual e-Laboratory (BioVeL) brings together scientists and service providers with the aim to define web services for the the integration of (meta)genomics data into cross-disciplinary analysis of biodiversity data. BioVeL meets the needs of Europe’s Biodiversity Science research community with...

BioVeL part 2: Discussion

submitted by: psterk1
BioVeL satellite meeting held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 27, 2011 ( http://gensc.org/gc_wiki/index.php/GSC_12 ). Biodiversity Virtual e-Laboratory (BioVeL) brings together scientists and service providers with the aim to define web services for the the integration of (meta)genomics data into cross-disciplinary analysis of biodiversity data. BioVeL meets the needs of Europe’s Biodiversity Science research community with tools for...

GSC 12 Session II: Biodiversity

submitted by: psterk1
The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 ( http://gensc.org/gc_wiki/index.php/GSC_12 ). Robert Robbins & Neil Davies, "Welcome & Introduction to the session proceedings" Renzo Kottmann, "DwC/MIxS: technical issues + proposed solutions” John Deck, "TDWG meets GBWG" Inigo San Gil, "LTER Use Cases” Peter Dawyndt, "Microbial Earth Catalogue" David Schindel, "CBOL...

GSC 12 Session IX: Keynote speech

submitted by: psterk1

The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 (http://gensc.org/gc_wiki/index.php/GSC_12).

Bicheng Yang (BGI Shenzhen, China) - BGI, Big Data and GigaScience

GSC 12 Session VIII cont'd: M5 Breakout group reports

submitted by: psterk1

The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 (http://gensc.org/gc_wiki/index.php/GSC_12).

M5 Breakout group reports

GSC 12 Session VIII: M5 - Towards interoperability

submitted by: psterk1

The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 (http://gensc.org/gc_wiki/index.php/GSC_12).

Discussion of requirements and path for the production of interoperability procedures, guidelines and data exchange specifications. Chair: Jeff Grethe (UCSD)

GSC 12 Session VII: The Evolution of a Community

submitted by: psterk1

The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 (http://gensc.org/gc_wiki/index.php/GSC_12).

The purpose of this session is to allow discussion time for brainstorming about the way forward for the GSC as a community. Chair: Dawn Field, CEH, UK.

GSC 12 Session VI: EnvO: deploying an environment ontology in the GSC

submitted by: psterk1
The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 ( http://gensc.org/gc_wiki/index.php/GSC_12 ). Barry Smith (U Buffalo) - An Introduction to Ontology as a Strategy for Data Integration Barry Smith (U Buffalo) - The Structure of the Environment Ontology Peter Dawyndt (Ghent University) - Microorganism-centered Computing 
Konstantinos Liolios (Lawrence Berkeley National Laboratory) -...

GSC 12 Session V: Developers Working Group - Standards supporting software development

submitted by: psterk1

The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 (http://gensc.org/gc_wiki/index.php/GSC_12).

Reports from discussions of various aspects of progressing GSC's software developments.

GSC 12 Session IV: MIxS

submitted by: psterk1
The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 ( http://gensc.org/gc_wiki/index.php/GSC_12 ). Lynn Schriml (University of Maryland) and Andreas Wilke (Argonne) - Extending MIxS for the Indoor Environment Anjanette Johnston (NCBI GenBank) - Metadata and GenBank: Submission Challenges and New Features Chris Hunter (ENA) - EBI, ENA, SRA, GSC, MIxS and EMG Boyke Bunk (DSMZ) - MIxS-ing...