metagenomics

MICW - Single Cells and Metagenomes: Doug Rusch

submitted by: JGI
JCVI's Doug Rusch on "Marriage or Civil Unions for Single Cells and Metagenomes" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - High-performance Computing: Brooklin Gore

submitted by: JGI
Morgridge Institute for Research's Brooklin Gore on "High Throughput Computing Impact on Meta Genomics" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - High-performance Computing: Narayan Desai

submitted by: JGI
Argonne National Lab's Narayan Desai on "Scaling MG-RAST to Terabases" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Metagenome Data Integration, Data Storage and Retrieval: Victor Markowitz

submitted by: JGI
DOE JGI's Victor Markowitz gives an overview of IMG challenges at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Scalability of Comparative Analysis, Novel Algorithms and Tools: Paramvir Dehal

submitted by: JGI
Berkeley Lab's Paramvir Dehal on "Managing and Storing large Datasets in MicrobesOnline, metaMicrobesOnline and the DOE Knowledgebase" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Scalability of Comparative Analysis, Novel Algorithms and Tools: Weizhong Li

submitted by: JGI
San Diego Supercomputer Center's Weizhong Li on "Effective Analysis of NGS Metagenomic Data with Ultra-fast Clustering Algorithms" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Assembly Quality Evaluation: Mihai Pop

submitted by: JGI
University of Maryland's Mihai Pop on "Genome Assembly Forensics: Metrics for Assessing Assembly Correctness" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Metagenome-specific Assembly: Sergey Koren

submitted by: JGI
University of Maryland's Sergey Koren on "denovo Metagenomic Assembly" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Metagenome Specific Assembly: Yasubumi Sakakibara

submitted by: JGI
Keio University's Yasumbumi Sakakibara on "MetaVelvet: An Extension of Velvet Assembler to de novo Metagenome Assembly from Short Sequence Reads" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

GSC 11: Sarah Hunter

submitted by: psterk1
EBI Metagenomics Portal. Sarah Hunter (European Bioinformatics Institute). Please note this video is incomplete. The 11th Genomic Standards Consortium Meeting (GSC 11), held at The Wellcome Trust Conference Centre, Hinxton, Cambridge, UK, April 4-6, 2011 (http://gensc.org/gc_wiki/index.php/GSC_11)
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