12/5/2013 Open Access Journal Club: Peter White and Michael Italia

submitted by: ucsd_idash
Harvest: an open platform for developing web-based biomedical data discovery and reporting applications Jeffrey W Pennington ,Byron Ruth ,Michael J Italia, Jeffrey Miller, Stacey Wrazien, Jennifer G Loutrel, E Bryan Crenshaw, Peter S White J Am Med Inform Assoc Published Online First: 16 October 2013 doi:10.1136/amiajnl-2013-001825 Peter White, Ph.D. Michael Italia, M.S. Children’s Hospital of Philadelphia We have addressed the acute need of researchers to make complex data...

iDASH External Webinar; 11/15/2013 Jaideep Vaidya

submitted by: ucsd_idash
Ensuring Privacy and Security for Healthcare Data Repositories Jaideep Vaidya Rutgers University Abstract: Big data has the potential to transform the healthcare system. However, to truly unlock this potential, we must be able to collect, analyze, and share data in healthcare repositories in a safe fashion. In this talk, we will examine some of the privacy and security challenges in maintaining large data repositories. I will present attacks against healthcare repositories from the...

11/7/2013 Open Access Journal Club; Imre Solti

submitted by: ucsd_idash
Developing and evaluating an automated appendicitis risk stratification algorithm for pediatric patients in the emergency department Louise Deleger, Holly Brodzinski, Haijun Zhai, Qi Li, Todd Lingren, Eric S Kirkendall, Evaline Alessandrini, Imre Solti J Am Med Inform Assoc Published Online First: 15 October 2013 doi:10.1136/amiajnl-2013-001962 Imre Solti Cincinnati Children’s Hospital Medical Center We analyzed the EHRs of a random sample of 2100 pediatric emergency department...

10/18/2013; iDASH External Webinar - Philip Bourne

submitted by: ucsd_idash
In the Future Will a Biological Database Really be Different than a Biological Journal? Philip Bourne University of San Diego California Abstract: I first posed this question in an Editorial in 2005. Well the future is now, so what is the answer to the question? I will give you at least my opinion of an answer and back it up with work that we and others have been doing at this interface. My own experience will be drawn from our database work with the RCSB Protein Data Bank (PDB) and...

Oct 3, 2013 Open Access Journal Club: Jessica Tenenbaum and Melissa Haendel

submitted by: ucsd_idash
A sea of standards for omics data: sink or swim? Jessica D Tenenbaum, Susanna-Assunta Sansone, Melissa Haendel J Am Med Inform Assoc doi:10.1136/amiajnl-2013-002066 Jessica Tenenbaum Duke Translational Medicine Institute Melissa Haendel Oregon Health and Science University In the era of big data, omic-scale technologies, and increasing calls for data sharing, it is generally agreed that the use of community-developed, open data standards is critical. Far less agreed upon is...