JGI

MICW - Metagenome Specific Assembly: Yasubumi Sakakibara

submitted by: JGI
Keio University's Yasumbumi Sakakibara on "MetaVelvet: An Extension of Velvet Assembler to de novo Metagenome Assembly from Short Sequence Reads" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

A genomic encyclopedia of bacteria and archaea

submitted by: phylogenomics
A talk by Jonathan Eisen at the GME 2007 Conference

Gene Robinson of the University of Illinois on "Evolutionary Genomic Analyses of Insect Society: Eat, Drink and Be Scary" at the

submitted by: JGI
Gene Robinson of the University of Illinois on "Genomic and Systems Biology Analyses of Social Behavior" at the 6th Annual Genomics of Energy & Environment Meeting on March 23, 2011.

John Oliver on "Beyond Nanopores"

submitted by: JGI
John Oliver of NABsys discusses implementing nanopore sequencing on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Saul Kravitz on "A Comprehensive Platform for NGS Data Analysis"

submitted by: JGI
Saul Kravitz of CLC Bio discusses the company's Genomic Workbench and how it can be used with data from next generation sequencing platforms on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Todd Smith on "Increasing the Scale of Deep Sequencing Data Analysis with BioHDF"

submitted by: JGI
Todd Smith of Geospiza discusses how BioHDF systems can be used with next generation DNA sequencing technologies on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Mike Fitzgerald on "Sequencing at the Broad"

submitted by: JGI
Mike Fitzgerald of the Broad Institute discusses sequencing platforms and pipeline overviews on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Nicole Rosenzweig on “Data Management Requirements for the Rapid Identification and Characterization of Unknown Genomic Samples”

submitted by: JGI
Nicole Rosenzweig of OptiMetrics discusses the development of informatics infrastructure for studying bacterial pathogens on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Ron Walters on the “National Interagency Genome Science Coordinating Committee”

submitted by: JGI
Ron Walters from Pacific Northwest National Laboratory discusses the federal response to threats of bioterrorism on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

GenePRIMP: A tool for improving microbial gene prediction quality

submitted by: JGI
Amrita Pati of the DOE Joint Genome Institute's Genome Biology group describes the software tool GenePRIMP and how it fits into the quality control pipeline for microbial genomics. Further details regarding GenePRIMP appear in a paper published online May 2, 2010 in Nature Methods.
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