MICW - Single Cells and Metagenomes: Tanja Woyke and Ramunas Stepanauskas

submitted by: JGI

DOE JGI's Tanja Woyke, chair of the Single Cells and Metagenomes session, delivers an introduction, followed by Bigelow Laboratory's Ramunas Stepanauskas on "Single Cell and Metagenomic Assemblies: Biology Drives Technical Choices and Goals" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Assembly Quality Evaluation: Mihai Pop

submitted by: JGI

University of Maryland's Mihai Pop on "Genome Assembly Forensics: Metrics for Assessing Assembly Correctness" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Metagenome-specific Assembly: Sergey Koren

submitted by: JGI

University of Maryland's Sergey Koren on "denovo Metagenomic Assembly" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Metagenome-specific Assembly: Jared Simpson

submitted by: JGI

Wellcome Trust Sanger Institute's Jared Simpson on "Memory efficient sequence analysis using compressed data structures" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Metagenome-Specific Assembly: Francis Chin

submitted by: JGI

University of Hong Kong's Francis Chin on "Meta-­‐IDBA: A de novo Assembler for Metagenomic Data" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Assembly Quality Evaluation: Alex Copeland and C. Titus Brown

submitted by: JGI

DOE JGI's Alex Copeland on "DOE JGI Quality Metrics" and Michigan State University's C. Titus Brown on "Approaches to Scaling and Improving Metagenome Assembly" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Introduction to Metagenomics at DOE JGI: Susannah Tringe

submitted by: JGI

Susannah Tringe of the DOE Joint Genome Institute talks about the Program Overview and Program Informatics at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Introduction to Metagenomics at the DOE JGI: Nikos Kyrpides

submitted by: JGI

After a quick introduction by DOE JGI Director Eddy Rubin, DOE JGI's Nikos Kyrpides delivers the opening remarks at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

Ed Buckler at the 2011 DOE JGI User Meeting

submitted by: JGI

Ed Buckler of Cornell University and the USDA-ARS on "Insights from Sequencing the World's Most Diverse Crop: Maize" at the 6th annual Genomics of Energy & Environment Meeting on March 24, 2011.

Scott Hodges at the 2011 DOE JGI User Meeting

submitted by: JGI

Scott Hodges of the University of California, Santa Barbara on "Genomic Speciation and Adaptation in Aquilegia" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011.