UPenn Library Open Notebook Science Talk Jan2010

submitted by: jcbradley
Jean-Claude Bradley presents "Open Notebook Science and other Science2.0 Approaches to Communicate Research" at the University of Pennsylvania Library on January 21, 2010. The introduction covers recent examples of where the sharing of laboratory notebook information in chemistry on the blogosphere has been key to resolving ambiguous results in the traditional literature. Other examples illustrate the inability to assess contradictory data in the literature simply because insufficient...

Cheminfo Retrieval Class 9th FA09

submitted by: jcbradley

A final overview of student assignments for the class, mainly about finding and reporting on sources of molecular properties.

Cheminfo Retrieval Class 8th FA09

submitted by: jcbradley
This is the lecture from the 8th Chemical Information Retrieval class at Drexel University on November 12, 2009. It starts with a demonstration of how to use of ChemSketch and Chemspider to display and manipulate chemical structures, especially those with complicated stereochemistry. Technical issues with using SMILES between the two platforms are addressed, as are optimization of 3D structures and inverting chiral centers. Microsoft Paint is used to process screen captures to images that...

Cheminfo Retrieval Class Six FA09

submitted by: jcbradley
This is the lecture from the sixth Chemical Information Retrieval class at Drexel University on October 29, 2009. It starts with a review of some of the new questions answered by students from the chemistry publishing FAQ, which covers patent information and accessing electronic journals at Drexel. Tony Williams submitted a puzzle to resolve conflicting structures in ChemSpider, which is too difficult to be a regular assignment. It requires re-analyzing spectroscopic data in papers where...

Cheminfo Retrieval Fifth Class FA09

submitted by: jcbradley
The fifth Chemical Information Retrieval class at Drexel University on October 22, 2009 started out with covering the new 3D structure viewer introduced recently at PLoS ONE to provide ideas for students doing a multimedia project this term. The current student answers to the chemistry publishing FAQ are then discussed. The reason for removing glatiramer acetate from ChemSpider is explained and a few databases (Wikipedia, PubChem, DrugBank) are visited that still contain the incorrect...

Cheminfo Retrieval Fourth Class FA09

submitted by: jcbradley
This is a recording of the fourth class on Chemical Information Retrieval on Oct 15, 2009 at Drexel University. It starts with some tips on removing formatting from Wikispaces pages, the Drexel Cisco VPN client for accessing paid subscriptions off campus and how to link to a DOI. The first two assignments for the class are then described. The first involves summarizing each paragraph of an article and an option to use AcaWiki is demonstrated. The second involves filling in an FAQ for...

NERM 09: Leveraging Transparency and Crowdsourcing in Chemistry Using Open Notebook Science

submitted by: jcbradley
Jean-Claude Bradley presents on October 9, 2009 at the Northeastern Regional Meeting of the American Chemical Society in Hartford. This talk, entitled "Leveraging Transparency and Crowdsourcing in Chemistry Using Open Notebook Science", was part of a symposium on Publishing and Promoting Chemistry in the Internet Age. It consists of an overview of Open Notebook Science with some new content on solubility prediction algorithms written by Andrew Lang and a few example of students taking a...

Cheminfo Retrieval Second Class FA09

submitted by: jcbradley

This is a recording of the second class on Chemical Information Retrieval on Oct 1, 2009 at Drexel University. The first part involves technical details about using the Wikispaces site and the rest is an open ended discussion of topics relating to publishing in science and chemistry: primary and secondary/tertiary sources, Open Access, copyright and Web2.0

Chemical Information Retrieval class 1 FA09

submitted by: jcbradley

Jean-Claude Bradley introduces Chemical Information Retrieval (CHEM 367 and CHEM 767) at Drexel University with an overview of topics to be covered. See class wiki at http://getcheminfo.wikispaces.com for details.