sequence

Keio University's Yasumbumi Sakakibara on "MetaVelvet: An Extension of Velvet Assembler to de novo Metagenome Assembly from Short Sequence Reads" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

JCVI's Doug Rusch on "Marriage or Civil Unions for Single Cells and Metagenomes" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

This video shows how to access DNA and protein sequence for S. cerevisiae strains at SGD.

We demonstrate the BLAST/BLAT tool in Ensembl. Search for a sequence in www.ensembl.org, and identify hits to the genome, or to genes, with this tool.

This video describes the Pattern Matching Tool available at the Saccharomyces Genome Database (SGD).

DOE JGI's Zhong Wang on "Massive Discovery of Biomass Degrading Genes and Genomes in Rumen" at the 6th Annual Genomics of Energy & Environment Meeting on March 24, 2011.

NataraJan Kannan discusses understanding protein kinase structure- function relationships using half a million genomic sequences.

DOE JGI's Igor Grigoriev and University of Utrecht's Han Wosten discuss the split-gill mushroom, a wood-degrading fungus whose genome was published online July 11, 2010 in Nature Biotechnology in this complement to the DOE Joint Genome Institute's news release (http://go.usa.gov/O8a).

Saul Kravitz of CLC Bio discusses the company's Genomic Workbench and how it can be used with data from next generation sequencing platforms on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Karen Davenport of Los Alamos National Laboratory discusses a high-throughput next generation genome finishing pipeline on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.