Los Alamos

MICW - Metagenome-specific Assembly: Patrick Chain

submitted by: JGI
Patrick Chain of DOE JGI at LANL, Co-Chair of the Metagenome-specific Assembly session, on "Metagenome Assembly at the DOE JGI" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

Patrick Chain on "A meeting perspective and advances in standards"

submitted by: JGI
Patrick Chain, a DOE JGI scientist at Los Alamos National Laboratory, looks back on previous SFAF meetings and gives an update on the genome standards first publicly proposed in 2009 on June 4, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Mark Roskey on "Sample Prep, Workflow Automation and Advanced Nucleic Acid Fractionation for Next Generation Sequencing"

submitted by: JGI
Mark Roskey of Caliper LifeSciences discusses how the company's technologies fit into the next generation sequencing workflow on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Todd Smith on "Increasing the Scale of Deep Sequencing Data Analysis with BioHDF"

submitted by: JGI
Todd Smith of Geospiza discusses how BioHDF systems can be used with next generation DNA sequencing technologies on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Jim Laugharn on "AFA-based DNA fragmentation"

submitted by: JGI
Jim Laugharn of Covaris discusses a critical first step for the standardization of next gen sequencing on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Finishing Panel at SFAF

submitted by: JGI
From left to right: Dibyendu Kumar of the University of Florida, Christian Buhay of Baylor College of Medicine, Andries van Tonder of Wellcome Sanger Trust Institute, Anna Montmayeur of the Broad Institute and Karen Davenport of Los Alamos National Laboratory at the Finishing forum on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Andries van Tonder on "Finishing Using Next Generation Technologies"

submitted by: JGI
Andries van Tonder of Wellcome Trust Sanger Institute discusses a pipeline for finishing genomes to the gold standard on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Christian Buhay on "Improved Microbe Assembly and Finishing using 454 8kb Libraries"

submitted by: JGI
Christian Buhay from Baylor College of Medicine's Human Genome Sequencing Center discusses microbial genome finishing strategies on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Rene Warren on "Sequencing the unrearranged human Immunoglobulin"

submitted by: JGI
Rene Warren from Canada's Michael Smith Genome Sciences Centre discusses sequencing and finishing the IgH heavy chain locus on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Arvind Bharti on "The Medicago HapMap Project"

submitted by: JGI
Arvind Bharti from the National Center for Genome Resources discusses resequencing 400 plant and bacteria genotypes on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.
vc