BindingDB: Get all data from an article

submitted by: gnicpro

This tutorial describes the method of retrieving a binding information from an article of interest in BindingDB.
http://bindingdb.org

Epizyme - HMT "Tree" Presentation Video

submitted by: Epizyme
A survey of the human genome was performed to understand the constituency of protein methyltransferases (both protein arginine and lysine methyltransferases) and the relatedness of their catalytic domains. We identified 51 protein lysine methyltransferase proteins based on similarity to the canonical Drosophila Su(var)3-9, enhancer of zeste (E(z)), and trithorax (trx) domain. Disruptor of telomeric silencing-1-like, a known protein lysine methyltransferase, did not fit within the protein...
Authors: Christopher Sneeringer, Margaret Scott, Keith Elliston, Danielle Johnston, Lei Jin, L. fred Jerva, Victoria Richon, Robert Copeland, Christina Majer

MiniSymposium Bradley Lab 2011

submitted by: jcbradley

Jean-Claude Bradley presents a 15 minute summary of current research in his lab on September 29, 2011 at the Drexel University Department of Chemistry Faculty Mini-Symposium. The main project discussed is the Open Melting Point Collection done in collaboration with Andrew Lang and Antony Williams. Work by Evan Curtin is also shown, demonstrating the application of melting point and solubility in reaction design.

ChemInfo2011-class2

submitted by: jcbradley
Jean-Claude Bradley presents the second lecture for Chemical Information Retrieval at Drexel University for Fall 2011 on September 30, 2011. The talk covers finding chemical property data on free and commercial databases, including Reaxys, SciFinder, ChemSpider and Google. An example is shown where an incorrect melting point for diazepam on the web and Reaxys was identified by carefully reading the original article. The use of Google Apps Scripts and other web services are covered....

ChemInfo2011-class1

submitted by: jcbradley

Jean-Claude Bradley presents the introductory lecture for Chemical Information Retrieval at Drexel University for Fall 2011 on September 23, 2011. Examples are given to demonstrate how difficult it can be to find and assess chemical information such as melting points. An overview of the class wiki is then given.

Bradley SLA Talk on Open Melting Point Collections

submitted by: jcbradley
Jean-Claude Bradley presented at a panel on New Forms of Scholarly Communication in Science at the Special Libraries Association meeting on June 15, 2011. The talk covered the role of trust in science, with a focus on the validation of melting point data. Where the literature was unable to reconcile measurements, Open Notebook Science was used to clarify. The collection of an Open Dataset of melting point measurements for 20,000 compounds was described as well as ongoing curation efforts...

University of the Sciences Open Chemistry Talk

submitted by: jcbradley

Jean-Claude Bradley presents on "Open Education in Chemistry Research and Classroom" at the University of the Sciences on January 11, 2011. The talk covers screencasting, wikis, chemical information validation, Open Notebook Science and smartphones.

Mirza PhD defense on the Ugi reaction for anti-malarial screening

submitted by: jcbradley
Khalid Baig Mirza defends his Ph.D. thesis at Drexel University on December 6, 2010 (advisor JC Bradley). He first discusses Open Notebook Science and his contribution to the sodium hydride oxidation controversy. Then he describes the UsefulChem project, involving the use of the Ugi reaction as an approach to synthesizing new anti-malarial agents, including a few unexpected side reactions and challenges. Finally he presents an overview of the ONS Solubility Challenge and its application to...

Dana Vanderwall on Cheminformatics at Drexel

submitted by: jcbradley
Dana Vanderwall, Associate Director of Cheminformatics at Bristol-Myers Squibb, presented at Drexel University for Jean-Claude Bradley's Chemical Information Retrieval class on December 2, 2010. The first part covers "Cheminformatics & The evolving relationship between data in the public domain & pharma" and includes a general discussion of modern drug discovery and the details of a malaria dataset recently released from the pharmaceutical industry to the public. The second part...

Nanoinformatics Talk on SMIRP and Open Notebook Science

submitted by: jcbradley
Jean-Claude Bradley presents on "The implications of Open Notebook Science and other new forms of scientific communication for Nanoinformatics" at the Nanoinformatics 2010 conference on November 3, 2010. The presentation first covers the use of the laboratory knowledge management system SMIRP for nanotechnology applications during the period of 1999-2001 at Drexel University. The exporting of single experiments from SMIRP and publication to the Chemistry Preprint Archive is then described...