Bioinformatics

This tip of the week introduces SNPxGE2, a SNP-coexpression association database. See more here:http://blog.openhelix.eu/?p=11050

This quick tip explores the new version of SNPeffect. For more information and links see http://blog.openhelix.eu/?p=10257

Course: Protein Prediction 2 Title: Prediction of Localization 4 Speaker: Tatyana Goldberg Date: 20111216 Semester: Winter 2011

Course: Protein Prediction 2 Title: Prediction of Localization 3 Speaker: Burkhard Rost Date: 20111209 Semester: Winter 2011

Course: Protein Prediction 2 Title: Bioinformatics in Industry Speaker: Andrea Schafferhans and Guy Yachdav Date: 20111207 Semester: Winter 2011

Course: Protein Prediction 2 Title: Protein Engineering 2 Speaker: Marc Offman Date: 20111202 Semester: Winter 2011

Course: Protein Prediction 2 Title: Protein Engineering Speaker: Marc Offman Date: 20111130 Semester: Winter 2011

See our blog post at URL http://blog.openhelix.com/?p=10810 for more information on this resource. In today’s tip I will introduce you to another one of our efforts to “extend research” by showing you a glimpse of an OpenHelix app that we designed for the SciVerse platform from Elsevier. This app scans a ScienceDirect journal article for any database names or URLs that we train on, and then displays a list of such resources in the window of the app.

A 5 minute tip on eggNOG, database of orthologous genes. Check out our blog post for more information: http://blog.openhelix.eu/?p=10634

JCVI's Doug Rusch on "Marriage or Civil Unions for Single Cells and Metagenomes" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.