gspudich's videos (9)


429
Aug 22, 2012
How to Install the Ensembl Perl APIs in 4 minutes

This is a quick "how-to" guide for installing the Ensembl Perl APIs. Installation by both cvs and ftp will be...

424
Oct 27, 2011
Demo: Using BLAST/BLAT in Ensembl

We demonstrate the BLAST/BLAT tool in Ensembl. Search for a sequence in www.ensembl.org, and identify hits to the...

376
Oct 27, 2011
Demo: Variation for the ZAP70 gene with Ensembl

We use the Ensembl genome browser at www.ensembl.org to view small scale sequence variants such as SNPs (single...

331
Oct 27, 2011
Demo: Structural variation for a region

Large structural variations like CNVs (copy number variation) are explored for a region of the human genome. We use...

299
Oct 27, 2011
Ensembl Overview (given at ErasmusMC, Sept 2011)

This is an overview of the data available in the Ensembl Genome Browser with a focus on the gene set and sequence...

291
Oct 27, 2011
Demo: Old genome coordinates to new

Genome sequences are updated with time. Your data might be on an older version of the genome, for example the human...

289
Jun 21, 2012
Patches and Haplotypes in the Human Genome

Why are patches included in Ensembl? How is it possible to view a patch alongside the primary sequence? We explore...

206
Oct 22, 2012
Looking at the Region of the LCT Gene

A comprehensive overview of how to use the Ensembl Region in Detail view (our main Location view) in order to view...

173
Apr 12, 2013
Viewing Ensembl Regulation & ENCODE Using the Matrix

This tutorial demonstrates how to view sequences potentially involved in gene regulation. These sequences are...