gspudich's videos (9)

Apr 12, 2013
Viewing Ensembl Regulation & ENCODE Using the Matrix

This tutorial demonstrates how to view sequences potentially involved in gene regulation. These sequences are...

Oct 22, 2012
Looking at the Region of the LCT Gene

A comprehensive overview of how to use the Ensembl Region in Detail view (our main Location view) in order to view...

Aug 22, 2012
How to Install the Ensembl Perl APIs in 4 minutes

This is a quick "how-to" guide for installing the Ensembl Perl APIs. Installation by both cvs and ftp will be...

Jun 21, 2012
Patches and Haplotypes in the Human Genome

Why are patches included in Ensembl? How is it possible to view a patch alongside the primary sequence? We explore...

Oct 27, 2011
Demo: Using BLAST/BLAT in Ensembl

We demonstrate the BLAST/BLAT tool in Ensembl. Search for a sequence in, and identify hits to the...

Oct 27, 2011
Demo: Old genome coordinates to new

Genome sequences are updated with time. Your data might be on an older version of the genome, for example the human...

Oct 27, 2011
Demo: Structural variation for a region

Large structural variations like CNVs (copy number variation) are explored for a region of the human genome. We use...

Oct 27, 2011
Demo: Variation for the ZAP70 gene with Ensembl

We use the Ensembl genome browser at to view small scale sequence variants such as SNPs (single...

Oct 27, 2011
Ensembl Overview (given at ErasmusMC, Sept 2011)

This is an overview of the data available in the Ensembl Genome Browser with a focus on the gene set and sequence...