RGenetics at Galaxy

submitted by: OpenHelix

Visit our blog for more info on this tip: http://blog.openhelix.eu/?p=4899 A tip introducing Rgenetics at Galaxy

Tip of the Week: Genome Variation Tour III

submitted by: OpenHelix

For more information, few the blog post at: http://blog.openhelix.eu/?p=4763 . This tip is the continuation of a genome variation tour. We will look at finding SNPs in LD with our SNP of interest using GVS

Tip of the Week: Genome Variation Tour II

submitted by: OpenHelix

More information can be found here: http://blog.openhelix.eu/?p=4602 . This week's tip in 2nd part in a 5 part series of tips following one variation in an individual's genome across several databases and resources to find out what information we gather about the clinical association of that variation. This wee we look at dbSNP, VarView and OMIM.

Tip of the Week: Genome Variation Tour I

submitted by: OpenHelix

You can read more at http://blog.openhelix.eu/?p=4455 . The first in a multi-part tour of the many resources available to the researcher or clinician looking into the data on genomic variation. Today's tip looks at UCSC Genome Browser and dbSNP.

Tip of the Week: WAVe

submitted by: OpenHelix

A quick introduction to WAVe (Web Analysis of the Variome), a great tool that pulls in a wealth of information about human gene variation. For a more high-resolution version of this tip and more information about the resource, visit the OpenHelix blog.

Shanmuga Sozhamannan on "To 'Finish' or not to 'Finish' - the $64K question in Genomics"

submitted by: JGI

Shanmuga Sozhamannan of the Biological Defense Research Directorate at the Naval Medical Research Center discusses how next generation sequencing technologies can be applied to clinical and biothreat situations at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 28, 2009.

Joann Mudge on "Medicago trunculata Resequencing of 384 Lines"

submitted by: JGI

Joann Mudge from the National Center for Genome Resources speaks at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 29, 2009.

Obtaining SNPs from UCSC Table Browser

submitted by: OpenHelix

A quick tip of the week on how to obtain a list of SNPs and data for a gene of interest quickly from the UCSC Table Browser

Genome Variation Server Introduction

submitted by: OpenHelix

This is an introduction to the Genome Variation Server at the University of Washington sponsored by GVS. You can get more freely available training materials on GVS including a longer introductory tutorial (40 minutes), slides, handouts and exercises at OpenHelix GVS Tutorial or visit the resource at GVS