simulation

An Accelerated View of Functional Dynamics in Bio-Molecular Systems

submitted by: icamvid
Phineus Markwick gives a talk at the RPP08 conference long time-scale MD simulations of protein dynamics. He discusses experiments using dipolar coupling to probe the protein dynamics. From these he shows how to build a simulation.

Quadrotor Simulation

submitted by: gimmechillout
Simple quadrotor simulation using PD control, visualized with Simulink 3D.

Analysis of climatic risk and coping strategies in corn production systems in the Philippines

submitted by: UP Los Baños
Analysis and quantification of possible risks and yield losses of corn production in Isabela and Bukidnon, Philippines due to climate variability and climatic extremes. Felino P. Lansigan Professor of Statistics Institute of Statistics College of Arts and Sciences University of the Philippines Los Baños

Agent-based model of laser hair removal: A treatment optimization and patient education tool.

submitted by: beapen
This video explains how to use the ABM of laser hair removal available at http://www.gulfdoctor.net/model/lhr.htm

UC San Diego Engineers Bring Down the House

submitted by: ucsandiego
Recent simulated earthquake tests conducted by UC San Diego engineers are expected to lead to retrofit schemes that make historic buildings safer. The structural engineers tested a structure similar to those that were built in California in the 1920s that have masonry-infilled walls and reinforced concrete frames.

Reconstruction of Alternative Splice Variants and Associated Abundances from Short Sequence Reads (CSHL Genome Informatics Conference 2008)

submitted by: micha
The FLUX CAPACITOR : next generation sequencing technologies provide an unprecedented capacity for surveying the nucleic acid content of cells. This profound sequencing depth may allow in particular for exhaustively sequencing through the large dyanimc range of RNA abundances in the cell, overcoming limitations imposed by current (random) clone selection approaches. However, the very short reads produced by the most cost-effective such technologies make the reconstruction of complete RNA...

Advances to the Biochemical, Genetic and Genomic (BiGG) Database

submitted by: jypark
The BiGG database is a widely used resource for sharing genome-scale metabolic reconstructions. BiGG integrates several published genome-scale metabolic networks into one resource with standard nomenclature which allows components to be compared across different species. Furthermore, BiGG contains links to several publicly available databases where additional information can be found and integrated. In addition, BiGG contains a customized export tool that enables the generation of SBML...

How Real Can We Be? Experiencing the Virtual Reality: A Dynamic 3D Model of the Calit2 Building

submitted by: zmz45

Building from an existing project in the Calit2 Immersive Visualization Lab, this research continues to develop a 3D digital model of the Calit2 building and its surroundings, where dynamic elements such as light sources, operating elevators, and automatic doors were added to offer a realistic sense to the artificial model.

D1.3.9-v1-Simulation and evaluation of realistic MEU ad-hoc communications in CARLINK scenarios by using VanetMobiSim/Ns-2

submitted by: jamal.toutouh
This video is part of CARLINK PROJECT simulation videos. It presents the performance of communications in Vehicular Ad-hoc Networks (VANETs) using the IEEE 802.11b standard in the transmission of files located in real enironments based on real areas of Malaga. - Jamal Toutouh -

Tumour cords' growth in a vascular network

submitted by: sast
Evolutions of oxygen concentration and formation of hypoxic zones during tumour growth in the vascular network. This simulation was produced with an experimental modification to the model, where vessels are oxygen sources inside the simulation domain, cells do not switch to anaerobic metabolism in this simulation. For more information refer to http://code.google.com/p/cord/.
vc