Jody Banks at the 2012 DOE JGI Genomics of Energy & Environment Meeting

submitted by: JGI

Jody Banks from Purdue University on "The Genome of Selaginella, a Remnant of an Ancient Vascular Plant Lineage" at the 7th Annual Genomics of Energy & Environment Meeting on March 21, 2012 in Walnut Creek, Calif.

MICW - Metagenome Specific Assembly: Yasubumi Sakakibara

submitted by: JGI

Keio University's Yasumbumi Sakakibara on "MetaVelvet: An Extension of Velvet Assembler to de novo Metagenome Assembly from Short Sequence Reads" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Single Cells and Metagenomes: Doug Rusch

submitted by: JGI

JCVI's Doug Rusch on "Marriage or Civil Unions for Single Cells and Metagenomes" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

Accessing sequence data for S. cerevisiae strains

submitted by: yeastgenome

This video shows how to access DNA and protein sequence for S. cerevisiae strains at SGD.

Demo: Using BLAST/BLAT in Ensembl

submitted by: gspudich

We demonstrate the BLAST/BLAT tool in Ensembl. Search for a sequence in www.ensembl.org, and identify hits to the genome, or to genes, with this tool.

PatMatch

submitted by: yeastgenome

This video describes the Pattern Matching Tool available at the Saccharomyces Genome Database (SGD).

Zhong Wang at the 2011 DOE JGI User Meeting

submitted by: JGI

DOE JGI's Zhong Wang on "Massive Discovery of Biomass Degrading Genes and Genomes in Rumen" at the 6th Annual Genomics of Energy & Environment Meeting on March 24, 2011.

Understanding Protein Kinase Structure

submitted by: icamvid

NataraJan Kannan discusses understanding protein kinase structure- function relationships using half a million genomic sequences.

"Sequencing Split-gill: Beyond Breaking Biomass"

submitted by: JGI

DOE JGI's Igor Grigoriev and University of Utrecht's Han Wosten discuss the split-gill mushroom, a wood-degrading fungus whose genome was published online July 11, 2010 in Nature Biotechnology in this complement to the DOE Joint Genome Institute's news release (http://go.usa.gov/O8a).

Saul Kravitz on "A Comprehensive Platform for NGS Data Analysis"

submitted by: JGI

Saul Kravitz of CLC Bio discusses the company's Genomic Workbench and how it can be used with data from next generation sequencing platforms on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.