Tip of the Week: InterMine for mining "big data"

submitted by: OpenHelix

The InterMine software for mining "big data" is friendly and customizable. More details at http://blog.openhelix.eu/?p=8313

Introduction to Biomedical Ontologies #4: Ontology Term Enrichment Using RatMine

submitted by: jennifer.r.smith
You've done your experiments and you have a list of genes that might be of interest, but…what now? Or you keep seeing the term "ontology term enrichment analysis" in the papers you're reading and, well, you have a vague idea of what that means, but you aren't really sure. Whether you're interested in information about gene functions, diseases, phenotypes or pathways, this video provides an overview of what ontology term enrichment analysis is and how you can use the "widgets" in RatMine...

Tip of the Week: YeastMine

submitted by: OpenHelix

For more information about this resource see our blog post at http://blog.openhelix.eu/?p=4968. In this tip we introduce YeastMine (beta) and show you how to make gene lists and link to other model organism information using InterMine's interoperability.

An introduction to the Ratmine database

submitted by: simont

This video provides a brief introduction to the new Ratmine (http://ratmine.mcw.edu) data warehouse and data mining tool released as part of the Rat Genome Database. It highlights some of Ratmine's key features and shows how to use Ratmine's Templates and Lists to find disease genes, common pathways and display protein-protein interactions and more.