BindingDB: Find my compound's targets

submitted by: gnicpro

This tutorial describes how to discover potentially new targets that may bind your compounds of interest in BindingDB. This unique capability is based on the principle that similar compounds tend to bind the same proteins.

BindingDB: Download all data for a target of interest

submitted by: gnicpro

This tutorial describes how to retrieve all published binding data for a particular protein target of interest in BindingDB.
http://bindingdb.org

UCSD Phar201 Computational Systems Medicine

submitted by: Phil

This is a podcast and slides of a lecture given on Nov 23, 2011 in the course Phar201 (http://www.sdsc.edu/pb/edu/pharm201/) at the University of California San Diego by graduate student Roger Chang. It covers the interface between structural bioinformatics and systems biology form the viewpoint of off-target drug effects and large scale metabolic modeling.

UCSD Phar201 Protein Ligand Interactions

submitted by: Phil

This is a podcast and slides of a lecture given on Nov 02, 2011 in the course Phar201 (http://www.sdsc.edu/pb/edu/pharm201/) at the University of California San Diego by Prof. Phil Bourne. It covers some aspects of protein ligand interactions with emphasis on SMAP for determining similar ligand binding sites and the pharmacological implications.

UCSD Phar201 Chemical Data and Computer-Aided Drug Discovery

submitted by: Phil

This is a podcast and slides of a lecture given on Nov 9, 2011 in the course Phar201 (http://www.sdsc.edu/pb/edu/pharm201/) at the University of California San Diego by Prof. Michael Gilson. It covers structure and ligand based structure methods used in drug discovery.

Structural Bioinformatics Pharm 201 UCSD Lecture 15

submitted by: Phil

This is lecture 15 from a graduate student class in structural bioinformatics offered at UCSD see http://www.sdsc.edu/pb/edu/pharm201/ The lecture covers a method for studying protein-ligand interactions. Specifically finding off-target binding sites that has implications for studying the side effects and repositioning existing drugs.