protein folding

What Is Protein Folding?

The terminal view on the left shows a 'tail' of the AMBER code output for a simulation of Myoglobin, a protein found in muscle fibers. In this video, the output is being run on a single Intel E5462 2.80 GHz CPU. The terminal view on the right shows the same AMBER code output, but run on a single NVIDIA C1060 GPU. The GPU run is about 40 times faster than the CPU run. Courtesy of Ross Walker, San Diego Supercomputer Center, UC San Diego.

This simulation shows a protein folding simulation of TRPCage (an artificially designed protein) running in implicit solvent. The simulation shows a single Intel E5462 2.80GHz CPU versus an NVIDIA C1060 GPU. Courtesy of Ross Walker, San Diego Supercomputer Center, UC San Diego.

Presented at the I2CAM/FAPERJ Spring School, 2008 in Rio de Janeiro, Brazil Andre Marco de Oliveira Gomes

Presented at the I2CAM/FAPERJ Spring School, 2008 in Rio de Janeiro, Brazil Clements (0:00) Andre Marco de Oliveira Gomes (34:00)

Presented at the I2CAM/FAPERJ Spring School, 2008 in Rio de Janeiro, Brazil Speaker (0:00) Clements (14:00)

Presented at the I2CAM/FAPERJ Spring School, 2008 in Rio de Janeiro, Brazil Jerson L. Silva (0:00)

Presented at the I2CAM/FAPERJ Spring School, 2008 in Rio de Janeiro, Brazil Daniel Schultz (0:00) Jerson L. Silva (50:20)

Presented at the I2CAM/FAPERJ Spring School, 2008 in Rio de Janeiro, Brazil Daniel Cox (6:15) Daniel Schultz (46:30)

Presented at the I2CAM/FAPERJ Spring School, 2008 in Rio de Janeiro, Brazil Jos