What Is Protein Folding?

submitted by: icamvid

What Is Protein Folding?

CPU vs GPU: AMBER Code Simulation

submitted by: btolo

The terminal view on the left shows a 'tail' of the AMBER code output for a simulation of Myoglobin, a protein found in muscle fibers. In this video, the output is being run on a single Intel E5462 2.80 GHz CPU. The terminal view on the right shows the same AMBER code output, but run on a single NVIDIA C1060 GPU. The GPU run is about 40 times faster than the CPU run.
Courtesy of Ross Walker, San Diego Supercomputer Center, UC San Diego.

CPU vs GPU: Protein Folding Simulation

submitted by: btolo

This simulation shows a protein folding simulation of TRPCage (an artificially designed protein) running in implicit solvent. The simulation shows a single Intel E5462 2.80GHz CPU versus an NVIDIA C1060 GPU.
Courtesy of Ross Walker, San Diego Supercomputer Center, UC San Diego.

Transport Dynamics in Live Cells, part 2

submitted by: icamvid

Presented at the I2CAM/FAPERJ Spring School, 2008 in Rio de Janeiro, Brazil
Andre Marco de Oliveira Gomes

Computational Studies of Biological Molecules, part 4; Transport Dynamics in Live Cells, part 1

submitted by: icamvid

Presented at the I2CAM/FAPERJ Spring School, 2008 in Rio de Janeiro, Brazil
Clements (0:00)
Andre Marco de Oliveira Gomes (34:00)

Physics of the Mitotic Spindle, part 3; Computational Studies of Biological Molecules, part 3

submitted by: icamvid

Presented at the I2CAM/FAPERJ Spring School, 2008 in Rio de Janeiro, Brazil
Speaker (0:00)
Clements (14:00)

NMR Fluorescense for Dynamic and Protein Folding / Aggregation Studies part 4

submitted by: icamvid

Presented at the I2CAM/FAPERJ Spring School, 2008 in Rio de Janeiro, Brazil
Jerson L. Silva (0:00)

Competence in B. subtilis, part 2; NMR Fluorescense for Dynamic and Protein Folding / Aggregation Studies part 3

submitted by: icamvid

Presented at the I2CAM/FAPERJ Spring School, 2008 in Rio de Janeiro, Brazil
Daniel Schultz (0:00)
Jerson L. Silva (50:20)

Organizing Principles for Amyloid Structure, Fibril Model, part 3; Competence in B. subtilis, part 1

submitted by: icamvid

Presented at the I2CAM/FAPERJ Spring School, 2008 in Rio de Janeiro, Brazil
Daniel Cox (6:15)
Daniel Schultz (46:30)

Energetic Frustration, Funnel Landscapes, and Topological Frustration, part 3

submitted by: icamvid

Presented at the I2CAM/FAPERJ Spring School, 2008 in Rio de Janeiro, Brazil
Jos