Addressing Peptide ID Signal-to-Noise with Target-Decoy Searching (Proteomics)

submitted by: dachian

How to improve signal-to-noise in proteomics search engine results from tandem mass spectrometry

Peptide ID and protein inference using PeptideProphet and ProteinProphet

submitted by: dachian

Advanced proteomics data analysis for identifying peptides and proteins with high sensitivity and specificity using proteomics mass-spectrometry.

Translational Proteomics 2.0 Meeting: SEQUEST and TPP Tips

submitted by: dachian

Advanced tips on using SEQUEST and TPP by Jimmy Eng of U. of Washington, the co-inventor of SEQUEST

Jason Flowers Metabolic Characterization of Candidatus Accumulibacter Phosphatis Using Metaproteomic Analysis

submitted by: dougramsey
In many freshwater bodies, phosphorus is a limiting nutrient for bacterial growth. To prevent eutrophication, enhanced biological phosphorus removal (EBPR) of waste water has been successfully applied at sewage plants for the past thirty years. Previous researchers could only speculate about the biochemical pathways involved in EBPR principally because the organisms responsible for EBPR cannot be isolated in pure culture. Using metagenomic data recently obtained from a Candidatus...