David Attenbourgh on the PDB

submitted by: Phil

The natural world comes in many forms.

BindingDB: Get all data from an article

submitted by: gnicpro

This tutorial describes the method of retrieving a binding information from an article of interest in BindingDB.
http://bindingdb.org

BindingDB: Download all data for a target of interest

submitted by: gnicpro

This tutorial describes how to retrieve all published binding data for a particular protein target of interest in BindingDB.
http://bindingdb.org

UCSD Phar201 Protein Ligand Interactions

submitted by: Phil

This is a podcast and slides of a lecture given on Nov 02, 2011 in the course Phar201 (http://www.sdsc.edu/pb/edu/pharm201/) at the University of California San Diego by Prof. Phil Bourne. It covers some aspects of protein ligand interactions with emphasis on SMAP for determining similar ligand binding sites and the pharmacological implications.

UCSD Phar201 Structural Domains in Proteins

submitted by: Phil

This is a podcast and slides of a lecture given on Nov 16, 2011 in the course Phar201 (http://www.sdsc.edu/pb/edu/pharm201/) at the University of California San Diego by Prof. Phil Bourne. It covers determining domains from 3D protein structure.

UCSD Phar201 Chemical Data and Computer-Aided Drug Discovery

submitted by: Phil

This is a podcast and slides of a lecture given on Nov 9, 2011 in the course Phar201 (http://www.sdsc.edu/pb/edu/pharm201/) at the University of California San Diego by Prof. Michael Gilson. It covers structure and ligand based structure methods used in drug discovery.

UCSD Phar201 Structural Aspects of Protein Protein Interactions

submitted by: Phil
This is a podcast and slides of a lecture given on Nov 4, 2011 in the course Phar201 ( http://www.sdsc.edu/pb/edu/pharm201/ ) at the University of California San Diego by Phil Bourne. It covers one methodology for determining the site of protein-protein interaction when one only has a single structural component of the complex. It is based on the paper found here http://www.sdsc.edu/pb/papers/chung05.pdf

Tip of the Week: VnD Resource for Genetic Variation and Drug Information

submitted by: OpenHelix

For more information about this resource, please see our blog post at URL http://blog.openhelix.eu/?p=9933. In this tip I introduce users to the VnD, or genetic Variation and Drug database from the Korean Bioinformation Center, or KOBIC.

Tip of the Week: From UniProt to the PSI SBKB and Back Again

submitted by: OpenHelix
For more information about these resources see our blog post at URL http://blog.openhelix.eu/?p=9579 . In this tip I show you why & how you can move from a UniProt protein report to either an RCSB PDB structure page or to search results in the Structural Biology Knowledgebase that provide information on established protocols and available materials related to the protein of interest.

Tip of the Week: RCSB PDB Data Distribution Summaries

submitted by: OpenHelix

For more information about this resource please see our blog post at URL http://blog.openhelix.eu/?p=6978. In today's tip I will feature the data distribution summaries and their drill down features which you can see from many RCSB PDB searches.