Dana Vanderwall on Cheminformatics at Drexel

submitted by: jcbradley
Dana Vanderwall, Associate Director of Cheminformatics at Bristol-Myers Squibb, presented at Drexel University for Jean-Claude Bradley's Chemical Information Retrieval class on December 2, 2010. The first part covers "Cheminformatics & The evolving relationship between data in the public domain & pharma" and includes a general discussion of modern drug discovery and the details of a malaria dataset recently released from the pharmaceutical industry to the public. The second part...

Nanoinformatics Talk on SMIRP and Open Notebook Science

submitted by: jcbradley
Jean-Claude Bradley presents on "The implications of Open Notebook Science and other new forms of scientific communication for Nanoinformatics" at the Nanoinformatics 2010 conference on November 3, 2010. The presentation first covers the use of the laboratory knowledge management system SMIRP for nanotechnology applications during the period of 1999-2001 at Drexel University. The exporting of single experiments from SMIRP and publication to the Chemistry Preprint Archive is then described...

OpenSciNY Open Notebook Science Talk

submitted by: jcbradley
On May 14, 2010 Jean-Claude Bradley presented on Open Notebook Science at the OpenSciNY conference at the New York University Library. He introduced the topic by telling a few stories about how new forms of communication are affecting how we think about concepts like "scientific precedent", "peer review", "scientific publishing" and "scientific scholarship". At the end he spoke about archiving Open Notebook Science projects culminating in the publication of the Reaction Attempts and ONS...

Education 2.0: Leveraging Collaborative Tools for Teaching

submitted by: jcbradley

Jean-Claude Bradley presents at the Drexel E-Learning 2.0 Conference on March 25, 2010. The talk covers the educational uses of screencasting, wikis, blogs, games, Google Spreadsheets and Second Life.

Peer Review and Science2.0

submitted by: jcbradley
Jean-Claude Bradley presents on "Peer Review and Science2.0: blogs, wikis and social networking sites" as a guest lecturer for the “Peer Review Culture in Scholarly Publication and Grantmaking” course at Drexel University. The main thrust of the presentation is that peer review alone is not capable of coping with the increasing flood of scientific information being generated and shared. Arguments are made to show that providing sufficient proof for scientific findings does scale and...

UPenn Library Open Notebook Science Talk Jan2010

submitted by: jcbradley
Jean-Claude Bradley presents "Open Notebook Science and other Science2.0 Approaches to Communicate Research" at the University of Pennsylvania Library on January 21, 2010. The introduction covers recent examples of where the sharing of laboratory notebook information in chemistry on the blogosphere has been key to resolving ambiguous results in the traditional literature. Other examples illustrate the inability to assess contradictory data in the literature simply because insufficient...

Cheminfo Retrieval Class Six FA09

submitted by: jcbradley
This is the lecture from the sixth Chemical Information Retrieval class at Drexel University on October 29, 2009. It starts with a review of some of the new questions answered by students from the chemistry publishing FAQ, which covers patent information and accessing electronic journals at Drexel. Tony Williams submitted a puzzle to resolve conflicting structures in ChemSpider, which is too difficult to be a regular assignment. It requires re-analyzing spectroscopic data in papers where...

Cheminfo Retrieval Fourth Class FA09

submitted by: jcbradley
This is a recording of the fourth class on Chemical Information Retrieval on Oct 15, 2009 at Drexel University. It starts with some tips on removing formatting from Wikispaces pages, the Drexel Cisco VPN client for accessing paid subscriptions off campus and how to link to a DOI. The first two assignments for the class are then described. The first involves summarizing each paragraph of an article and an option to use AcaWiki is demonstrated. The second involves filling in an FAQ for...

NERM 09: Leveraging Transparency and Crowdsourcing in Chemistry Using Open Notebook Science

submitted by: jcbradley
Jean-Claude Bradley presents on October 9, 2009 at the Northeastern Regional Meeting of the American Chemical Society in Hartford. This talk, entitled "Leveraging Transparency and Crowdsourcing in Chemistry Using Open Notebook Science", was part of a symposium on Publishing and Promoting Chemistry in the Internet Age. It consists of an overview of Open Notebook Science with some new content on solubility prediction algorithms written by Andrew Lang and a few example of students taking a...

The Spectral Game: Learning spectroscopy using open data

submitted by: jcbradley
Jean-Claude Bradley presents on the Spectral Game at the American Chemical Society meeting in Washington, DC on August 17, 2009. The talk provides an overview of how openness in both teaching and research can help generate new educational resources, especially for teaching NMR. At the end Antony Williams says a few words about the Spectral Game project and the ChemSpider database which powers it via Open Data JCAMP-DX spectral depositions. The other developers of the game are Andrew Lang...