MICW - Metagenome Data Integration, Data Storage and Retrieval: Victor Markowitz

submitted by: JGI

DOE JGI's Victor Markowitz gives an overview of IMG challenges at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Scalability of Comparative Analysis, Novel Algorithms and Tools: Kostas Mavrommatis

submitted by: JGI

DOE JGI's Kostas Mavrommatis, chair of the Scalability of Comparative Analysis, Novel Algorithms and Tools panel, at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Metagenome-specific Assembly: Sergey Koren

submitted by: JGI

University of Maryland's Sergey Koren on "denovo Metagenomic Assembly" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Introduction to Metagenomics at the DOE JGI: Nikos Kyrpides

submitted by: JGI

After a quick introduction by DOE JGI Director Eddy Rubin, DOE JGI's Nikos Kyrpides delivers the opening remarks at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

Nikos Kyrpides on “The Future of Microbial Genomics”

submitted by: JGI

Nikos Kyrpides, head of the Genome Biology group at the DOE Joint Genome Institute discusses current challenges in the field of microbial genomics on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

GenePRIMP: A tool for improving microbial gene prediction quality

submitted by: JGI

Amrita Pati of the DOE Joint Genome Institute's Genome Biology group describes the software tool GenePRIMP and how it fits into the quality control pipeline for microbial genomics. Further details regarding GenePRIMP appear in a paper published online May 2, 2010 in Nature Methods.

Jonathan Eisen discusses GEBA project at DOE JGI

submitted by: JGI

Jonathan Eisen spoke about the Genomic Encyclopedia of Bacteria and Archaea (GEBA) at the DOE JGI on October 27, 2009.

Nikos Kyrpides on Gene Calling Standards at GSC8

submitted by: JGI

Nikos Kyrpides of the DOE Joint Genome Institute discusses gene calling standards at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 10, 2009.

"Flash" Updates of GSC projects at GSC8

submitted by: JGI

In quick succession, MPI-Bremen's Frank Oliver Glockner, Berkeley Lab's Victor Markowitz, DOE JGI's Nikos Kyrpides, Argonne National Laboratory's Folker Meyer, the Marine Biology Laboratory's Linda Amaral-Zettler and Michigan State University's James Cole provide updates on a number of topics related to GSC projects at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.

Nikos Kyrpides on a GSC Global Genome Census at GSC8

submitted by: JGI

Nikos Kyrpides of the DOE Joint Genome Institute discusses the notion of a global genome census at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.