PatMatch

submitted by: yeastgenome

This video describes the Pattern Matching Tool available at the Saccharomyces Genome Database (SGD).

YeastMine: List Operations

submitted by: yeastgenome

List operations (union, intersect, and subtract) allow you to combine results from previous YeastMine queries and thus provide a powerful way to build complex queries.

YeastMine Widgets: GO Term Enrichment

submitted by: yeastgenome

This tutorial demonstrates how to use YeastMine to obtain a GO Term Enrichment analysis for a gene list.

YeastMine: Saving Search Results as a List

submitted by: yeastgenome

Describes how to save some or all of the search results from a YeastMine query into a list.

Tip of the Week: Plant comparative genomics with Plaza

submitted by: OpenHelix

This week's tip is how to get gene family phylogenies from Plaza, a plant comparative genomics resources. More information here: http://blog.openhelix.eu/?p=9664

YeastMine: Templates

submitted by: yeastgenome

This tutorial covers how to find and use the pre-made queries known as templates in SGD's data retrieval tool YeastMine.

Tip of the Week: Synteny and DotPlots at VISTA

submitted by: OpenHelix

A quick tip introducing how to access the dot plot and synteny information of VISTA. CHeck out the blog post for more information: http://blog.openhelix.eu/?p=8185

Tip of the Week: YeastMine

submitted by: OpenHelix

For more information about this resource see our blog post at http://blog.openhelix.eu/?p=4968. In this tip we introduce YeastMine (beta) and show you how to make gene lists and link to other model organism information using InterMine's interoperability.

Introduction to the RGD Phenotypes and Models Portal

submitted by: jennifer.r.smith

Despite what our name might imply, the Rat Genome Database contains much more than just genomic and genetic data for the rat. This video will give you an overview of the RGD Phenotypes and Models portal—a rich resource of information on topics including animal husbandry, identifying what rat strains are good models for certain human diseases, and normal physiological measurements for a variety of rat strains.

Jarret Glasscock on "Throughput to Insight... and Tackling the Messy Bits Between"

submitted by: JGI

Jarret Glasscock of Cofactor Genomics talks about short-read platforms at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 28, 2009.