Apr 2, 2015; Informatics Journal Club; Azadeh Nikfarjam

submitted by: ucsd_idash
Pharmacovigilance from social media: mining adverse drug reaction mentions using sequence labeling with word embedding cluster features. Nikfarjam A, Sarker A, O'Connor K, Ginn R, Gonzalez G. J Am Med Inform Assoc. 2015 Mar 9. pii: ocu041. doi: 10.1093/jamia/ocu041. [Epub ahead of print] Azadeh Nikfarjam Arizona State University, Department of Biomedical Informatics Social media is becoming increasingly popular as a platform for sharing personal health-related information. This...

Mar 5 2015; Informatics Journal Club Webinar; Edward Ambinder

submitted by: ucsd_idash
Objective: Develop and evaluate a foundational oncology-specific standard for communication and coordination of care throughout the cancer journey, with early-stage breast cancer as the use case. Materials and Methods: Due to broad uptake of the HL7 Consolidated Clinical Document Architecture (C-CDA) by health information exchanges and large provider organizations, we developed an implementation guide (IG) in congruence with C-CDA. The resultant product was balloted through the HL7 process...

Feb 5, 2015; Informatics Journal Club Webinar; Vivian West

submitted by: ucsd_idash
Innovative information visualization of electronic health record data: a systematic review Link: http://jamia.oxfordjournals.org/content/early/2014/11/07/amiajnl-2014-00... West VL, Borland D, Hammond WE. J Am Med Inform Assoc. 2014 Oct 21. pii: amiajnl-2014-002955. doi: 10.1136/amiajnl-2014-002955 Vivian West, PhD, MBA, RN Duke University, Duke Center for Health Informatics This study investigates the use of visualization techniques reported between 1996 and 2013 and evaluates...

Dec 4, 2014; Informatics Journal Club; Yves Lussier

submitted by: ucsd_idash
Challenges and remediation for Patient Safety Indicators in the transition to ICD-10-CM. Link: http://www.ncbi.nlm.nih.gov/pubmed/25186492 Boyd AD, Yang YM, Li J, Kenost C, Burton MD, Becker B, Lussier YA. J Am Med Inform Assoc. 2014 Sep 3. pii: amiajnl-2013-002491. doi: 10.1136/amiajnl-2013-002491 Yves Lussier University of Arizona Reporting of hospital adverse events relies on Patient Safety Indicators (PSIs) using International Classification of Diseases, Ninth Edition,...

Oct 2, 2014; Informatics Journal Club Webinar; Hua Xu

submitted by: ucsd_idash
Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality Hua Xu, Melinda C Aldrich, Qingxia Chen, Hongfang Liu, Neeraja B Peterson, Qi Dai, Mia Levy, Anushi Shah, Xue Han, Xiaoyang Ruan, Min Jiang, Ying Li, Jamii St Julien, Jeremy Warner, Carol Friedman, Dan M Roden, Joshua C Denny J Am Med Inform Assoc Published Online First: 22 July 201 doi:10.1136/amiajnl-2014-002649 Hua Xu The University of Texas...

Sept 4, 2014; Informatics Journal Club; Hardeep Singh and Dean Sittig

submitted by: ucsd_idash
An analysis of electronic health record-related patient safety concerns Derek W Meeks, Michael W Smith, Lesley Taylor, Dean F Sittig, Jean M Scott, Hardeep Singh J Am Med Inform Assoc doi:10.1136/amiajnl-2013-002578 Hardeep Singh, MD, MPH Michael E. DeBakey VA Medical Center Baylor College of Medicine Dean Sittig, PhD University of Texas Health Science Center A recent Institute of Medicine report called for attention to safety issues related to electronic health records (EHRs). We...

July 3, 2014; Journal Club Webinar; Carolyn Turvey

submitted by: ucsd_idash
Blue Button use by patients to access and share health record information using the Department of Veterans Affairs’ online patient portal Carolyn Turvey, Dawn Klein, Gemmae Fix, Tim Hogan, Susan Woods, Steven R Simon, Mary Charlton, Mary Vaughan-Sarrazin, Donna M Zulman, Lilian Dindo, Bonnie Wakefield, Gail Graham, Kim Nazi J Am Med Inform Assoc. 2014 Jul;21(4):657-63. doi: 10.1136/amiajnl-2014-002723. Epub 2014 Apr 16. Carolyn L. Turvey, Ph.D. University of Iowa Iowa City VA...

June 5, 2014; Informatics Journal Club; Shoba Phansalkar

submitted by: ucsd_idash
Evaluation of medication alerts in electronic health records for compliance with human factors principles 1. Shobha Phansalkar, 2. Marianne Zachariah, 3. Hanna M Seidling, 4. Chantal Mendes, 5. Lynn Volk, 6. David W Bates J Am Med Inform Assoc doi:10.1136/amiajnl-2013-002279 Shobha Phansalkar, RPh, PhD Brigham and Women’s Hospital Harvard Medical School Wolters Kluwer Health Increasing the adoption of electronic health records (EHRs) with integrated clinical decision support...

May 1, 2014: Journal Club Webinar; Jeffrey Klann

submitted by: ucsd_idash
Query Health: standards-based, cross-platform population health surveillance Jeffrey G Klann, Michael D Buck, Jeffrey Brown, Marc Hadley, Richard Elmore, Griffin M Weber, Shawn N Murphy J Am Med Inform Assoc doi:10.1136/amiajnl-2014-002707 Jeffrey Klann, PhD Instructor of Medicine, Harvard Medical School Assistant in Computer Science, Massachusetts General Hospital Understanding population-level health trends is essential to effectively monitor and improve public health. The...

4/3/2014 iDASH Informatics Open Access Journal Club

submitted by: ucsd_idash
HUGO: Hierarchical mUlti-reference Genome cOmpression for aligned reads Pinghao Li, Xiaoqian Jiang, Shuang Wang, Jihoon Kim, Hongkai Xiong, Lucila Ohno-Machado J Am Med Inform Assoc doi:10.1136/amiajnl-2013-002147 Xiaoqian Jiang and Shuang Wang Division of Biomedical Informatics, University of California San Diego The proposed method produced a compression ratio in the range 0.5–0.65, which corresponds to 35–50% storage savings based on experimental datasets. The proposed...