Video Tip of the Week: Microbiome Resources From JGI

submitted by: OpenHelix

For more information about this resource, see our blog post at URL http://blog.openhelix.eu/?p=13147. We visit both IMG/M (IMG with Microbiome Samples) (briefly) and the Integrated Microbial Genomes-Human Microbiome Project, or IMG/HMP in today’s tip.

Ruth Ley at the 2011 DOE JGI User Meeting

submitted by: JGI

Ruth Ley of Cornell University on "Relating Host Genetic Variation to the Microbiome" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011.

Rob Knight at the 2011 DOE JGI User Meeting

submitted by: JGI

Rob Knight of the University of Colorado on "Spatially and Temporally Resolved Studies of the Human Microbiome" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011.

Peer Bork at the 2011 DOE JGI User Meeting

submitted by: JGI

Peer Bork of the European Molecular Biology Laboratory on "Comparative Metagenomics of Gut and Ocean: Identification of Microbial Marker Genes for Complex Environmental Properties" at the 6th annual Genomics of Energy & Environment Meeting on March 23, 2011.

Trevor Wagner on "Use of Optical Mapping to Aid in Assembly and Finishing of Human Microbiome Genome Projects"

submitted by: JGI

Trevor Wagner of OpGen, Inc. discusses the use of optical mapping to validate the assembly of HMP genomes on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Finishing Panel at SFAF

submitted by: JGI

From left to right: Dibyendu Kumar of the University of Florida, Christian Buhay of Baylor College of Medicine, Andries van Tonder of Wellcome Sanger Trust Institute, Anna Montmayeur of the Broad Institute and Karen Davenport of Los Alamos National Laboratory at the Finishing forum on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

Christian Buhay on "Improved Microbe Assembly and Finishing using 454 8kb Libraries"

submitted by: JGI

Christian Buhay from Baylor College of Medicine's Human Genome Sequencing Center discusses microbial genome finishing strategies on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

GSC 9: Welcome to JCVI by Karen Nelson and Barbara Methe

submitted by: psterk1

9th Genomic Standards Consortium Workshop held at JCVI, Rockville, MD, USA April 28-30, 2010.
Welcome to JCVI by Karen Nelson.
Presentation by Barbara Methe: The Application of Standards to the NIH Roadmap Human Microbiome Project (HMP

Weinstock on Human Microbiome Project and Wortman on the HMP DACC at GSC8

submitted by: JGI

George Weinstock from Washington University School of Medicine talks about the Human Microbiome Project (HMP) followed briefly by Jennifer Wortman from the University of Maryland School of Medicine on the Data Analysis and Coordination Center (DACC) portal to the HMP at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.

Shannon Dugan on "Finishing at BCM-HGSC"

submitted by: JGI

Shannon Dugan from the Human Genome Sequencing Center at Baylor College of Medicine speaks at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 28, 2009.