Ensembl Overview (given at ErasmusMC, Sept 2011)

submitted by: gspudich

This is an overview of the data available in the Ensembl Genome Browser with a focus on the gene set and sequence variation. Four demos follow this presentation, using www.ensembl.org.

Tip of the Week: UCSC Genome Browser Track Hubs

submitted by: OpenHelix

This tip introduces a new feature at UCSC, Track Hubs. You can read more about it on the blog: http://blog.openhelix.eu/?p=9907

Tip of the Week: Getting flanking sequence of genomic locations

submitted by: OpenHelix

This week's tip is on using Galaxy to get flanking sequence. See http://blog.openhelix.eu/?p=9808 for more information.

YeastMine Widgets: GO Term Enrichment

submitted by: yeastgenome

This tutorial demonstrates how to use YeastMine to obtain a GO Term Enrichment analysis for a gene list.

Jim Tiedje at the 2011 DOE JGI User Meeting

submitted by: JGI

Jim Tiedje of Michigan State University on "Tackling Metagenomics' Largest Challenge: The Great Prairie Project" at the 6th annual Genomics of Energy & Environment Meeting on March 24, 2011.

Magnus Nordborg at the 2011 DOE JGI User Meeting

submitted by: JGI

Magnus Nordborg of the Gregor Mendel Institute on "How to Lose Half your Genome in 10 Million Years and Live to tell the Tale: Comparative Genomics of Arabidopsis lyrata and A. thaliana" at the 6th annual Genomics of Energy & Environment Meeting on March 24, 2011.

Tom Juenger at the 2011 DOE JGI User Meeting

submitted by: JGI

Tom Juenger of the University of Texas at Austin on "The Physiological Changes of Panicum: Exploring Switchgrass Responses to Climate Change" at the 6th annual Genomics of Energy & Environment Meeting on March 24, 2011.

Ed Buckler at the 2011 DOE JGI User Meeting

submitted by: JGI

Ed Buckler of Cornell University and the USDA-ARS on "Insights from Sequencing the World's Most Diverse Crop: Maize" at the 6th annual Genomics of Energy & Environment Meeting on March 24, 2011.

Tip of the Week: Plant comparative genomics with Plaza

submitted by: OpenHelix

This week's tip is how to get gene family phylogenies from Plaza, a plant comparative genomics resources. More information here: http://blog.openhelix.eu/?p=9664

Selecting and viewing data tracks in GBrowse

submitted by: yeastgenome

A tutorial on selecting, viewing and manipulating data tracks in SGD's GBrowse genome browser.