GENECAPP Approach

submitted by: MCW_BBC

Brief description of GENECAPP procedure

WIsconsin CEGS Idea

submitted by: MCW_BBC

The Wisconsin Center of Excellence in Genomics Science

Tip of the Week: SNPxGE2, SNP-coexpression associations

submitted by: OpenHelix

This tip of the week introduces SNPxGE2, a SNP-coexpression association database. See more here:http://blog.openhelix.eu/?p=11050

Tip of the Week: eggNOG, orthologous genes

submitted by: OpenHelix

A 5 minute tip on eggNOG, database of orthologous genes. Check out our blog post for more information: http://blog.openhelix.eu/?p=10634

MICW - High-performance Computing: Brooklin Gore

submitted by: JGI

Morgridge Institute for Research's Brooklin Gore on "High Throughput Computing Impact on Meta Genomics" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - High-performance Computing: Zhong Wang and Shane Canon

submitted by: JGI

DOE JGI's Zhong Wang, chair of the High-performance Computing session, gives a brief introduction before Berkeley Lab's Shane Canon talks about "Exploiting HPC Platforms for Metagenomics: Challenges and Opportunities" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Metagenome Data Integration, Data Storage and Retrieval: Owen White

submitted by: JGI

University of Maryland's Owen White on "Metagenome Data Integration, Data Storage and Retrieval" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Metagenome Data Integration, Data Storage and Retrieval: Guy Cochrane

submitted by: JGI

EMBL-EBI's Guy Cochrane on "A Collaborative Ecosystem Model for Metagenomics Data Preservation" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Metagenome Data Integration, Data Storage and Retrieval: Johannes Goll

submitted by: JGI

JCVI's Johannes Goll on "Using Solr/Lucene for Large-Scale Metagenomics Data Retrieval and Analysis" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Scalability of Comparative Analysis, Novel Algorithms and Tools: Paramvir Dehal

submitted by: JGI

Berkeley Lab's Paramvir Dehal on "Managing and Storing large Datasets in MicrobesOnline, metaMicrobesOnline and the DOE Knowledgebase" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.