Viewing Ensembl Regulation & ENCODE Using the Matrix

submitted by: gspudich
This tutorial demonstrates how to view sequences potentially involved in gene regulation. These sequences are analysed by Ensembl Regulation based mostly on ENCODE data, along with Roadmap Epigenomics data for human. The end of this tutorial shows how to add the full ENCODE data set to a genome display in Ensembl. The Region in Detail in the Ensembl browser will be explored. You may be interested in: Ensembl Regulation docs: http://www.ensembl.org/info/docs/func ... Region in Detail...

Around the Nucleus

submitted by: ahernk

This video is a surreal presentation of a Metabolic Melody by Kevin Ahern (www.davincipress.com/metabmelodies.html for more info). The tune is The Beatle's "Across the Universe." The lyrics and video are by Kevin Ahern and the recording is by David Simmons

MWV Episode 66 - Curtis Suttle: Marine Virology

submitted by: MicrobeWorld
In MicrobeWorld Video episode 66 Dr. Stan Maloy talks with Curtis Suttle, Professor of Earth & Ocean Sciences, Microbiology & Immunology, and Botany, and Associate Dean of Science University of British Columbia. Dr. Suttle is one of the World's leading marine virologists, and is among a small group of researchers that is credited with launching the field of marine virology. Dr. Maloy talks with Dr. Suttle about the incredible diversity of the ocean's microscopic inhabitants that...

Looking at the Region of the LCT Gene

submitted by: gspudich
A comprehensive overview of how to use the Ensembl Region in Detail view (our main Location view) in order to view data about a genomic region. We focus on the region of the LCT gene in human. Links from this video: Video: Patches and Haplotypes in the Human Genome ( http://youtu.be/sPE9j_Hw9HU ) Video: Browsing RNA-Seq Data in Ensembl ( http://youtu.be/9NUibgdkTRY ) FAQ: What styles are available for the data tracks in views like Region in Detail?(...

Todd Smith (PerkinElmer) at the 2012 SFAF Meeting

submitted by: JGI

Todd Smith on "The PerkinElmer Omics Laboratory" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

Julien Tremblay (DOE JGI) at the 2012 SFAF Meeting

submitted by: JGI

Julien Tremblay on "Evaluation of multiplexed 16S rRNA microbial population surveys using Illumina MiSeq platform" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

Christian Whitchurch (DTRA) at the 2012 SFAF Meeting

submitted by: JGI

Christian Whitchurch on the "DTRA Algorithm Prize" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

Ze Peng (DOE JGI) at the 2012 SFAF Meeting

submitted by: JGI

Ze Peng on "Fosmid Cre-LoxP Inverse PCR Paired-End (Fosmid CLIP-PE), A Novel Method for Constructing Fosmid Pair-End Library" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

Ajay Athavale (Monsanto) at the 2012 SFAF Meeting

submitted by: JGI

Ajay Athavale on "High throughput plasmid sequencing with Illumina and CLC bio" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

How to Install the Ensembl Perl APIs in 4 minutes

submitted by: gspudich

This is a quick "how-to" guide for installing the Ensembl Perl APIs. Installation by both cvs and ftp will be demonstrated. All commands in this video can be found at the following url:
ftp://ftp.ebi.ac.uk/pub/databases/ensembl/Helpdesk/API_video_script.txt