Computational Approaches to Nanosafety and Nanomedicine

submitted by: UP Los Baños
2nd Focus Lecture by Dr. Eduardo R. Mendoza, Visiting Scientist, Department of Membrane Chemistry, Max Planck Institute of Biochemistry, Germany and Senior Research Scientist, Faculty of Physics & Center for NanoScience, Ludwig Maximilian University, Munich, Germany. The lecture covered: (1) Understanding nanoparticle-cell interactions for nanosafety and nanomedicine, (2) A basic model of gold nanoparticles-cell interactions, (3) modelling targeted drug delivery with functionalized...

Greg Hidley - MSI-CIEC OptiPortal Workshop 2011

submitted by: jsale

Greg Hidley of Cal-IT2 presents an overview and some background on the Optiportal.

Q and A - MSI-CIEC OptiPortal Workshop 2011

submitted by: jsale

Question and answer session with Tom Defanti and other Cal-IT2 Optiportal personnel.

Blue Bird Game

submitted by: SDSCStudentTECH

This game was created using Alice at an Alice Workshop hosted by the San Diego Supercomputer Center. For more information about student workshops visit http://education.sdsc.edu/studenttech/ .

CPU vs GPU: AMBER Code Simulation

submitted by: btolo

The terminal view on the left shows a 'tail' of the AMBER code output for a simulation of Myoglobin, a protein found in muscle fibers. In this video, the output is being run on a single Intel E5462 2.80 GHz CPU. The terminal view on the right shows the same AMBER code output, but run on a single NVIDIA C1060 GPU. The GPU run is about 40 times faster than the CPU run.
Courtesy of Ross Walker, San Diego Supercomputer Center, UC San Diego.

CPU vs GPU: Protein Folding Simulation

submitted by: btolo

This simulation shows a protein folding simulation of TRPCage (an artificially designed protein) running in implicit solvent. The simulation shows a single Intel E5462 2.80GHz CPU versus an NVIDIA C1060 GPU.
Courtesy of Ross Walker, San Diego Supercomputer Center, UC San Diego.

Modeling Early Galaxies Using Radiation Hydrodynamics

submitted by: btolo
This simulation uses a flux-limited diffusion solver to explore the radiation hydrodynamics of early galaxies, in particular, the ionizing radiation created by Population III stars. At the time of this rendering, the simulation has evolved to a redshift of 3.5. The simulation volume is 11.2 comoving megaparsecs, and has a uniform grid of 1024^3 cells, with over 1 billion dark matter and star particles. The simulation was computed on resources of the National Institute for Computational...

San Diego Supercomputer Center Building Dedication Ceremony (part 7 of 7)

submitted by: btolo
With the press of a large 'I/O' button and strobe lights simulating a "powering up" sequence, officials of the San Diego Supercomputer Center (SDSC) and University of California, San Diego ushered in the next era of data-intensive computing by dedicating a new, energy-efficient building extension as a key resource for UC San Diego and beyond. Part 7 of 7 - "Ribbon Cutting" SDSC Building Dedication Website

San Diego Supercomputer Center Building Dedication Ceremony (part 6 of 7)

submitted by: btolo

With the press of a large 'I/O' button and strobe lights simulating a "powering up" sequence, officials of the San Diego Supercomputer Center (SDSC) and University of California, San Diego ushered in the next era of data-intensive computing by dedicating a new, energy-efficient building extension as a key resource for UC San Diego and beyond.

Part 6 of 7 - Frieder Seible

SDSC Building Dedication Website

San Diego Supercomputer Center Building Dedication Ceremony (part 5 of 7)

submitted by: btolo

With the press of a large 'I/O' button and strobe lights simulating a "powering up" sequence, officials of the San Diego Supercomputer Center (SDSC) and University of California, San Diego ushered in the next era of data-intensive computing by dedicating a new, energy-efficient building extension as a key resource for UC San Diego and beyond.

Part 5 of 7 - Art Ellis

SDSC Building Dedication Website