Berkeley Lab

MICW - High-performance Computing: Zhong Wang and Shane Canon

submitted by: JGI
DOE JGI's Zhong Wang, chair of the High-performance Computing session, gives a brief introduction before Berkeley Lab's Shane Canon talks about "Exploiting HPC Platforms for Metagenomics: Challenges and Opportunities" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Metagenome Data Integration, Data Storage and Retrieval: Victor Markowitz

submitted by: JGI
DOE JGI's Victor Markowitz gives an overview of IMG challenges at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

MICW - Scalability of Comparative Analysis, Novel Algorithms and Tools: Paramvir Dehal

submitted by: JGI
Berkeley Lab's Paramvir Dehal on "Managing and Storing large Datasets in MicrobesOnline, metaMicrobesOnline and the DOE Knowledgebase" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

"Flash" Updates of GSC projects at GSC8

submitted by: JGI
In quick succession, MPI-Bremen's Frank Oliver Glockner, Berkeley Lab's Victor Markowitz, DOE JGI's Nikos Kyrpides, Argonne National Laboratory's Folker Meyer, the Marine Biology Laboratory's Linda Amaral-Zettler and Michigan State University's James Cole provide updates on a number of topics related to GSC projects at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.

Janet Jansson on the Terragenome Initiative at GSC8

submitted by: JGI
Janet Jansson of the Lawrence Berkeley National Laboratory discusses the Terragenome Initiative at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 9, 2009.

Victor Markowitz on "IMG Systems for Comparative Analysis of Microbial Genomes and Metagenomes"

submitted by: JGI
Victor Markowitz, head of the Biological Data Management and Technology Center at Lawrence Berkeley National Laboratory, talks about the Integrated Microbial Genomes system housed at the DOE JGI at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 29, 2009.
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