SWIB14 - Dan Whaley - All knowledge, annotated

submitted by: SWIB
This August the W3C chartered the Web Annotation Working Group, based around an RDF data model called Open Annotation, which is rapidly being integrated into new open source tools and software libraries and adopted by a diverse cross-section of scholars, scientists, educators and others. The potential is to create a new layer over the web as we know it, enabling a rich set of interactive capabilities that until now have not been possible. This talk will provide an overview of the history...

Gene Annotator Tutorial

submitted by: RGD.Videos

The Gene Annotator takes a list of gene symbols, RGD IDs, GenBank accession numbers, Ensembl identifiers, and/or a chromosomal region, and retrieves annotation data from RGD. This tool will retrieve annotations from any or all ontologies used at RGD for genes and their orthologs, as well as links to additional information at other databases.

The Tranche data repository: Progress made and lessons learned from 24.4 TB of data, 1,612 users and 12,458 depositions.

submitted by: ucsd_idash
ABSTRACT High-throughput data production in proteomics and other post-genome disciplines has resulted in many data sharing, annotation, and dissemination challenges. Successful systems require as much thought and effort be put into the social aspects of engineering as the software side. Close relationships with data generators and users are crucial as is the recognition that development of a database to support a static field is quite different from research fields where the data types,...

Visualization and Analysis of Multiple Streams of Time-Coded Data

submitted by: ucsd_idash
ABSTRACT In many fields of observational research, it is increasingly common to collect many types of data about the activity of study participants, including things such as digital video, system logs, and sensor data. I will present ChronoViz, a tool I have developed for annotation, visualization, navigation, and analysis of multiple streams of time-coded data. Researchers using ChronoViz can navigate data in multiple ways, including through the use of interactive paper technology, and...

George Weinstock (Washington University) at the 2012 SFAF Meeting

submitted by: JGI

George Weinstock, associate director at the Genome Institute at Washington University, delivered the opening keynote "Towards the Perfect Genome Sequence" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.

GSC Projects and Activities: GCDML, GRS and M5

submitted by: psterk1

The 13th Genomic Standards Consortium Meeting (GSC 13). Hosted by BGI and held at Kingkey Palace Hotel, Shenzhen, China, March 4-7, 2012 (http://gensc.org/gc_wiki/index.php/GSC_13).

Peter Sterk (University of Oxford): GCDML, GRS.
Jared Wilkening (Argonne National Laboratory): M5

Habitat-Lite and the GSC Working Groups

submitted by: psterk1

The 13th Genomic Standards Consortium Meeting (GSC 13). Hosted by BGI and held at Kingkey Palace Hotel, Shenzhen, China, March 4-7, 2012 (http://gensc.org/gc_wiki/index.php/GSC_13).

Peter Sterk (University of Oxford)
Habitat-Lite, The GSC MIxS Compliance and Interoperability Group, the GSC Biodiversity Working Group and GSC Membership

GSC Projects and activities: The MIxS family of GSC standards

submitted by: psterk1

The 13th Genomic Standards Consortium Meeting (GSC 13). Hosted by BGI and held at Kingkey Palace Hotel, Shenzhen, China, March 4-7, 2012 (http://gensc.org/gc_wiki/index.php/GSC_13).

Peter Sterk (University of Oxford)
GSC Projects and activities: The MIxS family of GSC standards

Open discussion about MIxS standards-related issues

submitted by: psterk1

The 13th Genomic Standards Consortium Meeting (GSC 13). Hosted by BGI and held at Kingkey Palace Hotel, Shenzhen, China, March 4-7, 2012 (http://gensc.org/gc_wiki/index.php/GSC_13).

Open discussion about MIxS standards-related issues.

GSC’s eJournal Standards in Genomic Sciences (SIGS)

submitted by: psterk1

The 13th Genomic Standards Consortium Meeting (GSC 13). Hosted by BGI and held at Kingkey Palace Hotel, Shenzhen, China, March 4-7, 2012 (http://gensc.org/gc_wiki/index.php/GSC_13).

George Garrity (Michigan State University, USA).
GSC’s eJournal Standards in Genomic Sciences (SIGS).