annotation

Matteo Pellegrini on "Annotation of Plant Genomes using RNA-seq Data"

submitted by: JGI
Matteo Pellegrini from University of California, Los Angeles presents at the JGI/Argonne HPC Workshop on January 25, 2010.

Ross Overbeek on "Casting Annotation as an Optimization Problem"

submitted by: JGI
Ross Overbeek of the Fellowship for Interpretation of Genomes presents at the JGI/Argonne HPC Workshop on January 25, 2010.

Jonathan Eisen and the GEBA project - video linked to news release re Dec. 2009 Nature paper

submitted by: JGI
DOE JGI Phylogenomics Program Head and UC Davis professor Jonathan Eisen discusses the GEBA project in this complement to the news release regarding the GEBA paper published in the journal Nature on December 24, 2009.

Introduction to Biomedical Ontologies 3: Anatomy of an Ontology Annotation, part 2

submitted by: jennifer.r.smith
Are you missing the added value that you could be getting from ontology annotations? You know what ontologies are—maybe you've even used them on occasion. But if the only part of an ontology annotation that you take into account is the term itself, you could be skipping over valuable information that the other components of annotations supply. This video will give you insight into what that "valuable information" is and how to interpret what you see when you examine ontology annotations.

Pascal Gaudet on the Biocurator Society at GSC8

submitted by: JGI
Pascal Gaudet of Northwestern University talks about "The Biocurator Society" at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 11, 2009.

Nikos Kyrpides on Gene Calling Standards at GSC8

submitted by: JGI
Nikos Kyrpides of the DOE Joint Genome Institute discusses gene calling standards at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 10, 2009.

Owen White on Consensus Annotation at the GSC8

submitted by: JGI
Owen White of the University of Maryland talks about "Comparing Annotations: Towards Consensus Annotation" at the Genomic Standards Consortium's 8th meeting at the DOE JGI in Walnut Creek, Calif. on Sept. 10, 2009.

Introduction to Biomedical Ontologies #2: Anatomy of an Ontology Annotation, part 1

submitted by: jennifer.r.smith
Do you find that, like many who use biomedical ontologies, the only part of an ontology "annotation" you use is the ontology term itself? Perhaps you've noticed from time to time that there are some other things that seem to tag along with the ontology term but never really paid attention to those. Or perhaps you are just learning about ontologies and you want to know where the ontology "annotations" come from and what they are based on. This video gives a general overview of how ontology...

Rice Genome Annotation Project Website: Expression Tools Tutorial (Part 2/2)

Tutorial on the Rice Genome Annotation Project website: http://rice.plantbiology.msu.edu/

Rice Genome Annotation Project Website: Home Page Tutorial

Tutorial on the Rice Genome Annotation Project website: http://rice.plantbiology.msu.edu/