Epigenomics of Cancer - Prof. Wei Li (Part 1, 2009)
Epigenomics of Cancer - Prof. Wei Li (Part 1, 2009)
by: ralanharris
|
February 19, 2009
Prof. Wei Li lectures on studies of transcription factor binding sites and histone modifications using ChIP-chip and...
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Tags
- absolute value
- accuracy
- Affy array
- affymetrix Tiling Array
- Agilent
- algorhythm
- Alternative Splicing
- annotation
- antibody
- Arabidopsis CHiP-chip
- array comparison
- array hybridization
- baseline probe behavior
- Baylor College of Medicine
- Binding Sites
- bins
- biological replicas
- Biostatistics
- blast
- BLAT
- Blind test
- borrowing probes
- breast cancer
- C
- CEAS
- cell
- cellular biology
- ChIP-chip/seq
- ChIP-region detection
- chromatin
- Chromatin ImmunoPrecipitation
- Cis-regulatory Element Annotation System
- companies
- control
- control matrix
- costs
- count square
- crosslinking
- ctrl replicates
- Dan L. Duncan Cancer Center
- data analysis
- data drill
- DNA
- DNA accessibility
- DNA methylation
- DNA sequence
- double helix
- Empirical Bayes Shrinkage Test
- ENCODE clones
- ENCODE Spike
- ENCyclopedia of DNA Elements
- endogenous TF
- enriched DNA
- epigenetic
- equatiions
- estrogen receptor
- evaluation
- experiment
- failed samples
- False Discovery Rate
- FDR estimation
- fold changes
- FoxA1 regulation
- G Effect
- gene expression
- gene function
- gene regulators
- Genome-wide Location Analysis
- genomic
- GTRANS/TAS
- H3K27me3
- H3K36me3
- H3K4me1/2/3
- H3K9me3
- heredity
- Hidden Markov Model
- high output of data
- high signal
- histone modificatios
- histone proteins
- Human ChiP-chip
- hypothesis drill
- hypothesis generation
- intaction
- internal spike-in
- journal
- Lab locations
- long-ter effects
- low-level analysis
- Mann-Whitney U-test
- mapping
- MAT
- mDIP-chip/sequence
- mechanism
- medical
- micro-array experiment
- microarray
- Model-based Analysis of Tiling-array
- Molecular Biology
- motif
- National Institute of Health
- negative peaks
- neighboring probes combination
- NIH Epigenomics Roadmap
- NimbleGen
- noisy probe values
- normalization
- nucleaotides
- nucleosome
- observed probe intensity
- observed probe variance
- oligonucleotides
- organisms
- PCR amplification
- peak detection
- performance
- pipeline
- polymerse chain reaction
- position-specific A
- positive peaks
- pranscription potential
- predicted probe intensity
- probe alignment
- probe behavior
- probe behavioral model
- probe intensity
- probe level fluorescence
- probe loaction and copy number
- probe standartization
- probe values
- probes
- prostate cancer
- protein
- publishing
- quantatative science
- random sample
- receptors
- repeat library file
- Reproducibility
- resolution
- reverse crosslink and DNA purification
- rice genes
- RNA
- sample size
- screenshot
- sequence analysis
- shape
- simulations
- sliding window
- software
- Solexa
- SOLiD Sequencing
- sonication
- statistics
- study
- symmetric background
- T-statistic
- TF-DNA interaction
- TF-specific antibody
- The Human Genome Project
- transcription regulation in cancer
- transform factor
- unbiased quantitative Read-out
- visualization
- Wei Li
- xMAN
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