UCSD Next-Generation Sequencing and Informatics Symposium http://www.scivee.tv/node/9957 en SLIPPER: An Iterative Mapping Pipeline for Short DNA Sequences http://www.scivee.tv/node/10183 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10183">read more</a></p> Iterative Mapping Pipeline san diego Short DNA Sequences SLIPPER Terry Gaasterland University of California UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10183 at http://www.scivee.tv De Novo Assembly of Short Reads as a Discovery Tool http://www.scivee.tv/node/10203 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10203">read more</a></p> Assembly of Short Reads BC Cancer Research Center De Novo Discovery Tool Inanc Birol UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10203 at http://www.scivee.tv Multiplex sequencing of organelle genomes using sequencing-by-synthesis technology: Insights from the first 100 plastomes http://www.scivee.tv/node/10184 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10184">read more</a></p> first 100 plastomes Multiplex sequencing organelle genomes Pacific Northwest Research Station Richard Cronn sequencing-by-synthesis USDA Forest Service UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10184 at http://www.scivee.tv Bing Ren From ChIP-chip to ChIP-Seq: unraveling the second code of the human genom http://www.scivee.tv/node/10205 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10205">read more</a></p> Bing Ren ChIP-chip to ChIP-Seq human genome san diego second code University of California UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10205 at http://www.scivee.tv Rapid and Automated Building of a Human Genome from Aligned Short Reads http://www.scivee.tv/node/10185 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10185">read more</a></p> Aligned Short Reads Automated Building human genome Illumina Inc. Richard Carter UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10185 at http://www.scivee.tv Illumina http://www.scivee.tv/node/10206 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10206">read more</a></p> Analysis array-based clinic collaborative interactions disease research drug development flexible function genetic variation Illumina industry-leading support innovative technologies molecular tests personalized medicine rapid delivery revolutionary assays RNA scalable service solutions studies Technology tools UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10206 at http://www.scivee.tv Second Generation RNA-seq http://www.scivee.tv/node/10186 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10186">read more</a></p> current state data analysis data analysis tools Genomes human genome knowledge latest data analysis algorithms new applications Next-generation sequencing overview presentations research researchers scientists UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10186 at http://www.scivee.tv Assembling Short and error-Prone DNA Reads http://www.scivee.tv/node/10207 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10207">read more</a></p> assembly DNA Reads Pavel Pevzner Short and error-Prone UC San Diego UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10207 at http://www.scivee.tv Welcome to Next-Generation Sequencing 2008 Conference http://www.scivee.tv/node/10187 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10187">read more</a></p> algorithmic developments Calit2 CASB Center for Algorithmic and Systems Biology de novo sequencing digital gene expression epigenetics genotyping increase in data quality Informatics Symposium introduction latest data analysis algorithms new applications next-generation Next-generation sequencing presentations protein-DNA interactions reports resequencing sequencing techniques SNP mapping symposium targeted sequencing tools UC San Diego volume UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10187 at http://www.scivee.tv Alta-Cyclic - A self Optimizing Base Caller for the Illumina Genome Analyzer http://www.scivee.tv/node/10208 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10208">read more</a></p> Alta-Cyclic Base Caller Cold Spring Harbor Labs Illumina Genome Analyzer self Optimizing Yaniv Erlich UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10208 at http://www.scivee.tv Mapping the Arabidopsis Epigenome and Transcriptome by Deep Sequencing http://www.scivee.tv/node/10188 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10188">read more</a></p> Arabidopsis Epigenome Deep Sequencing mapping Ryan Lister Transcriptome UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10188 at http://www.scivee.tv Informatics and Experimental Strategies for De Novo Genome Sequencing with Short Read http://www.scivee.tv/node/10189 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10189">read more</a></p> De Novo Elliott Margulies Experimental Strategies Genome Sequencing Informatics National Human Genome Research Institute Short Reads UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10189 at http://www.scivee.tv Identification of genetic variants within specific regions of the human genome http://www.scivee.tv/node/10192 <div class="og_rss_groups"><ul class="links"><li class="first last 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class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10195">read more</a></p> consumer industries cost-effective database technology expanded participation genomic dat genomic revolution genomics genomics information greater ease-of-use high-quality inability to change industry web site lack of scalability life science life science research enterprises maintenance costs personalized medicine poor user interfaces relevance research search technology software application unified view UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10195 at http://www.scivee.tv Genomic association study (CHIP-Seq) of Liver X receptors beta in combination with gene expression analysis http://www.scivee.tv/node/10196 <div class="og_rss_groups"><ul class="links"><li class="first last 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UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10175 at http://www.scivee.tv Gary Schroth Analysis of the Human Transcriptome by Next-Gen Sequencing http://www.scivee.tv/node/10197 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10197">read more</a></p> Analysis Gary Schroth Human Transcriptome Illumina Inc. Next-Gen Sequencing UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10197 at http://www.scivee.tv Unraveling gene regulation mechanisms: insights into chromatin modeling http://www.scivee.tv/node/10178 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10178">read more</a></p> chromatin modeling gene regulation gene regulation mechanisms Karine Le Roch UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10178 at http://www.scivee.tv Empirical methods for controlling false positives and estimating confidence in ChIP-seq peaks http://www.scivee.tv/node/10198 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10198">read more</a></p> ChIP-seq peaks controlling false positives David Nix Empirical methods estimating confidence Huntsman Cancer Institute Utah UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10198 at http://www.scivee.tv The Tuxedo tools: ultra high-throughput mapping of short sequencing reads http://www.scivee.tv/node/10179 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10179">read more</a></p> Cole Trapnell short sequencing Tuxedo tools ultra high-throughput mapping UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10179 at http://www.scivee.tv DNA Star http://www.scivee.tv/node/10199 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10199">read more</a></p> alignment Analysis Bioinformatics DNASTAR early pioneers editing Frederick Blattner geneticists Genetics history John Schroeder Lasergene life scientists molecular biologists protein sequences research tools sequence assembly software tools University of Wisconsin UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10199 at http://www.scivee.tv The long march: a sample preparation technique that enhances contig length and coverage by high-throughput short-read sequencing http://www.scivee.tv/node/10180 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10180">read more</a></p> contig length coverage DeRisi Lab high-throughput short-read sequencing Katherine Sorber preparation technique UCSF UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10180 at http://www.scivee.tv Dick McCombie Targeted resequencing with long range PCR and hybrid capture http://www.scivee.tv/node/10201 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10201">read more</a></p> Cold Spring Harbor Laboratory hybrid capture long range PCR Targeted resequencing W. Richard McCombie UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10201 at http://www.scivee.tv Targeted Human Genome Resequencing http://www.scivee.tv/node/10181 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10181">read more</a></p> Hanlee Ji Human Genome Resequencing Stanford University Medical Center Targeting UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10181 at http://www.scivee.tv De Novo Genome Sequencing of the Venturia inaequalis (apple scab) Using the Illumina Genome Analyser http://www.scivee.tv/node/10202 <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/9957" class="og_links">UCSD Next-Generation Sequencing and Informatics Symposium</a></li> </ul></div><p><a href="http://www.scivee.tv/node/10202">read more</a></p> apple scab De Novo Genome Sequencing Illumina Genome Analyser Jasper Rees South Africa University of the Western Cape Venturia inaequalis UCSD Next-Generation Sequencing and Informatics Symposium Sun, 01 Mar 2009 01:33:20 -0800 dougramsey 10202 at http://www.scivee.tv