http://www.scivee.tv/node/51914 en http://www.scivee.tv/node/52787 <p>Todd Smith on "The PerkinElmer Omics Laboratory" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Bioinformatics biologists Caliper cytometry Department of Energy DOE Joint Genome Institute epigenomics gene expression genome genome sequence Geospiza JGI LANL Los Alamos mass spectrometry metabolomic new sequencing technologies next generation sequencing PerkinElmer proteomic Santa Fe sequencing sequencing platforms SFAF Todd Smith transcriptomics 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 28 Aug 2012 12:38:27 -0700 JGI 52787 at http://www.scivee.tv http://www.scivee.tv/node/52711 <p>Julien Tremblay on "Evaluation of multiplexed 16S rRNA microbial population surveys using Illumina MiSeq platform" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> 454 Department of Energy DOE JGI DOE Joint Genome Institute genome HiSeq Illumina LANL Los Alamos metagenome microbial populations MiSeq multiplexing (barcoding) new sequencing technologies next generation sequencing Santa Fe sequencing sequencing platforms SFAF 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Fri, 24 Aug 2012 11:57:36 -0700 JGI 52711 at http://www.scivee.tv http://www.scivee.tv/node/52710 <p>Todd Lane on "RapTOR: Automated sequencing library preparation and suppression for rapid pathogen characterization" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> bioweapons Department of Energy DOE Joint Genome Institute genome sequence Infectious Diseases Los Alamos new sequencing technologies next generation sequencing Pathogens rapid threat organism recognition RapTOR Sandia Santa Fe sequence sequencing platforms SFAF 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Fri, 24 Aug 2012 11:46:19 -0700 JGI 52710 at http://www.scivee.tv http://www.scivee.tv/node/52709 <p>Christian Whitchurch on the "DTRA Algorithm Prize" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> algorithms Bioinformatics biologists Defense Threat Reduction Agency Department of Energy diagnostic sample diagnostician DOE Joint Genome Institute DTRA genome genome sequence LANL Los Alamos new sequencing technologies next generation sequencing Santa Fe SFAF 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Fri, 24 Aug 2012 11:16:20 -0700 JGI 52709 at http://www.scivee.tv http://www.scivee.tv/node/52667 <p>Ze Peng on "Fosmid Cre-LoxP Inverse PCR Paired-End (Fosmid CLIP-PE), A Novel Method for Constructing Fosmid Pair-End Library" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Bioinformatics Department of Energy DOE JGI DOE Joint Genome Institute fosmid end sequencing fungi genome genome assembly HiSeq Illumia LANL Los Alamos new sequencing technologies next generation sequencing plants Santa Fe sequencing sequencing platforms SFAF software 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Wed, 22 Aug 2012 17:22:57 -0700 JGI 52667 at http://www.scivee.tv http://www.scivee.tv/node/52661 <p>John Crow on "Introducing NCGR Informatics" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Bioinformatics Department of Energy DOE Joint Genome Institute genome sequence high-performance computing LANL Los Alamos microbial genomics Moore Foundation National Center for Genome Resources NCGR new sequencing technologies next generation sequencing RNA-Seq Santa Fe sequencing SFAF Transcriptome USDA-ARS 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Wed, 22 Aug 2012 12:57:10 -0700 JGI 52661 at http://www.scivee.tv http://www.scivee.tv/node/52660 <p>David Sexton on "Mercury: next-gen data analysis and annotation pipeline" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Baylor College of Medicine Bioinformatics cancer analysis CASAVA data analysis Department of Energy DOE JGI DOE Joint Genome Institute genome annotation Illumina LANL Los Alamos Mercury pipeline new sequencing technologies next generation sequencing Santa Fe sequencing sequencing platforms whole exome capture whole genome sequencing 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Wed, 22 Aug 2012 12:50:17 -0700 JGI 52660 at http://www.scivee.tv http://www.scivee.tv/node/52643 <p>Ajay Athavale on "High throughput plasmid sequencing with Illumina and CLC bio" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> 454 Bioinformatics CLC bio Department of Energy DOE Joint Genome Institute genome genome assembly genome sequence Illumina LANL Los Alamos Monsanto new sequencing technologies next generation sequencing plasmids Sanger Santa Fe sequence sequencing platforms SFAF SOLiD 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Wed, 22 Aug 2012 10:42:53 -0700 JGI 52643 at http://www.scivee.tv http://www.scivee.tv/node/52596 <p>Kamlesh Patel on "Preparation of nucleic acid libraries for personalized sequencing systems using an integrated microfluidic hub technology" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Bioinformatics biosurveillance Department of Energy digital microfluidic platform DNA forensics DOE Joint Genome Institute genome assembly genome sequence Illumina LANL Los Alamos microfludic techniques MiSeq new sequencing technologies next generation sequencing Sandia Santa Fe sequencing platforms SFAF 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 21 Aug 2012 14:17:28 -0700 JGI 52596 at http://www.scivee.tv http://www.scivee.tv/node/52594 <p>Oksana Lukjancenko on "PanFunPro: bacterial pan-genome analysis based on the functional profiles" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Antimicrobial bacteria bacterial assembly Bioinformatics Department of Energy DOE Joint Genome Institute genome LANL Los Alamos microbial genomes new sequencing technologies next generation sequencing PanFunPro pangenome proteome Santa Fe sequencing sequencing platforms Taxonomy Technical University of Denmark 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 21 Aug 2012 13:54:55 -0700 JGI 52594 at http://www.scivee.tv http://www.scivee.tv/node/52592 <p>Ben McMahon on "Signature peptide-enabled metagenomics" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Bioinformatics Department of Energy DOE Joint Genome Institute genome Los Alamos metagenomics microbial genomes new sequencing technologies next generation sequencing Peptides phylogenetics Santa Fe sequencing platforms SFAF soil metagenomics soil microbes 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 21 Aug 2012 13:45:19 -0700 JGI 52592 at http://www.scivee.tv http://www.scivee.tv/node/52591 <p>Michael FitzSimons on "Nearly finished genomes produced using gel microdroplet culturing reveals substantial intraspecies diversity within the human microbiome" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> bacteria Bioinformatics Department of Energy DOE Joint Genome Institute gel microdroplets genome human microbiome LANL Los Alamos MDA microbes microbial genomics microdroplet new sequencing technologies next generation sequencing Santa Fe sequence sequencing platforms SFAF single cell sequencing 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 21 Aug 2012 13:32:00 -0700 JGI 52591 at http://www.scivee.tv http://www.scivee.tv/node/52588 <p>Matthew Ross on "Metagenomics for etiological agent discovery" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Alkek Center Baylor Baylor College of Medicine Bioinformatics cDNA chemotherapy Department of Energy DOE JGI DOE Joint Genome Institute epidemiological etiologic genome immunocompromised LANL Los Alamos metagenomics microbes microbiome Santa Fe sequence SFAF viral bacterial 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 21 Aug 2012 11:46:12 -0700 JGI 52588 at http://www.scivee.tv http://www.scivee.tv/node/52583 <p>Shuangye Yin on "Finished prokaryotic genome assemblies from a low-cost combination of short and long reads" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> ALLPATHS-LG Bioinformatics Broad Department of Energy DOE Joint Genome Institute genome assembly Illumina LANL Los Alamos manual finishing microbes new sequencing technologies next generation sequencing PacBio prokaryotes Santa Fe sequencing platforms SFAF whole genome sequencing 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 21 Aug 2012 09:18:41 -0700 JGI 52583 at http://www.scivee.tv http://www.scivee.tv/node/52582 <p>Sean Sykes on "Putting the Pieces Together: From Assembly to Analysis" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> assembly analysis package Bioinformatics Broad Department of Energy DOE Joint Genome Institute genome assembly LANL Los Alamos new sequencing technologies next generation sequencing Santa Fe sequencing platforms SFAF 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 21 Aug 2012 08:55:44 -0700 JGI 52582 at http://www.scivee.tv http://www.scivee.tv/node/52540 <p>Bruce Walker on "Pilon: Automated Assembly Improvement Software" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Bioinformatics Broad contigs de novo genome assembly DOE Joint Genome Institute genome assembly LANL Los Alamos new sequencing technologies next generation sequencing Pilon Santa Fe SFAF software 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Mon, 20 Aug 2012 15:51:08 -0700 JGI 52540 at http://www.scivee.tv http://www.scivee.tv/node/52539 <p>Scott Jordan on "Advances in high-throughput speed, low-latency communication for embedded instrumentation" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Bioinformatics biologists Department of Energy DOE Joint Genome Institute fast scanning genomics interfacing techniques interfacing technologies LANL Los Alamos metrology nanoscale stabilization Physik Instrumente Santa Fe sequencing platforms SFAF 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Mon, 20 Aug 2012 15:44:43 -0700 JGI 52539 at http://www.scivee.tv http://www.scivee.tv/node/52538 <p>Justin Zook on "Why whole genome sequencing methods differ" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> algorithms Bioinformatics Department of Energy DOE Joint Genome Institute Justin Zook LANL Los Alamos National Institute of Standards and Technologies new sequencing technologies next generation sequencing NIST pipelines Santa Fe sequencing sequencing platforms SFAF whole genome sequencing 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Mon, 20 Aug 2012 15:33:03 -0700 JGI 52538 at http://www.scivee.tv http://www.scivee.tv/node/52537 <p>David Gordon on "Consed with Next-Gen Data and BAM Files" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> ace file aligned reads BAM file CONSED David Gordon Department of Energy DOE Joint Genome Institute genome genome assembly LANL Los Alamos new sequencing technologies Santa Fe sequencing sequencing platforms SFAF snps software Washington University 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Mon, 20 Aug 2012 15:08:32 -0700 JGI 52537 at http://www.scivee.tv http://www.scivee.tv/node/52534 <p>Xun Xu on "Resolving Cancer Heterogeneity by Single Cell Sequencing" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> BGI DOE Joint Genome Institute exome genome LANL Los Alamos next generation sequencing Santa Fe sequencing sequencing platforms SFAF single cell sequencing software 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Mon, 20 Aug 2012 12:48:50 -0700 JGI 52534 at http://www.scivee.tv http://www.scivee.tv/node/52531 <p>Ward Wakeland on "An Analysis of the Genomic Architecture at Risk Loci for SLE" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> assembly autoimmune disease biologists Department of Energy DOE Joint Genome Institute finishing genome genomic architecture immunology LANL Los Alamos resequencing Santa Fe sequencing SFAF SLE snps University of Texas Ward Wakeland 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Mon, 20 Aug 2012 11:09:55 -0700 JGI 52531 at http://www.scivee.tv http://www.scivee.tv/node/52239 <p>Matthew Scholz on "Metagenomic assembly: Challenges, Successes and Validation" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> DeBruijn Department of Energy DOE Joint Genome Institute genome assembly genome sequence LANL Los Alamos metagenome assembly new sequencing technologies next generation sequencing Santa Fe sequencing platforms SFAF 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Fri, 27 Jul 2012 17:32:14 -0700 JGI 52239 at http://www.scivee.tv http://www.scivee.tv/node/52235 <p>Alex Copeland on "Assembly of large metagenome data sets using a Convey HC-1 hybrid core computer" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Bioinformatics carbon cycle Convey Department of Energy DOE Joint Genome Institute genome annotation genome assembly Great Prairie Grand Challenge HiSeq Illumina LANL Los Alamos metagenome metagenomics microbial genomes new sequencing technologies next generation sequencing Santa Fe sequencing platforms SFAF Velvet 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Fri, 27 Jul 2012 15:19:34 -0700 JGI 52235 at http://www.scivee.tv http://www.scivee.tv/node/52206 <p>Glenn Tesler on "SPAdes, a new genome assembly algorithm and its applications to single-cell sequencing" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> bacteria Bioinformatics Department of Energy DOE Joint Genome Institute genome assembly genome sequence LANL Los Alamos metagenome new sequencing technologies next generation sequencing sequencing sequencing platforms SFAF single-cell sequencing SPAdes Tesler UC San Diego 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Thu, 26 Jul 2012 17:10:43 -0700 JGI 52206 at http://www.scivee.tv http://www.scivee.tv/node/52205 <p>Surya Saha on "Endosymbiont hunting in the metagenome of Asian citrus psyllid (Diaphorina citri)" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Asian citrus psyllid Bioinformatics citrus Cornell University Department of Energy DOE Joint Genome Institute endosymbionts genome annotation LANL Los Alamos new sequencing technologies Santa Fe sequencing sequencing platforms software Wolbachia 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Thu, 26 Jul 2012 16:46:43 -0700 JGI 52205 at http://www.scivee.tv http://www.scivee.tv/node/52158 <p>Michael FitzGerald on "A rapid whole genome sequencing and analysis system supporting genomic epidemiology" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> 454 assembly Bioinformatics Broad Department of Energy DOE Joint Genome Institute e. coli Europe genome annotation genome sequence HUS outbreaks Illumina LANL Los Alamos microbes MiSeq new sequencing technologies next generation sequencing PacBio Roche Sanger Santa Fe sequence sequencing platforms software whole genome sequencing 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 24 Jul 2012 13:53:39 -0700 JGI 52158 at http://www.scivee.tv http://www.scivee.tv/node/52157 <p>Rita Colwell on "Experimental Reservoirs of Human Pathogens: The Vibrio cholerae paradigm" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> cholera climate change Department of Energy DOE Joint Genome Institute finished sequence genome annotation genomics LANL Los Alamos microbial genomes new sequencing technologies next generation sequencing Public Health Rita Colwell Santa Fe satellites sequencing sequencing platforms SFAF single-cell sequencing university of maryland Vibrio cholerae zooplankton 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 24 Jul 2012 12:57:42 -0700 JGI 52157 at http://www.scivee.tv http://www.scivee.tv/node/52156 <p>Catherine Campbell on "Finishing and Special Motifs: Lessons learned from CRISPR analysis using next-generation draft sequences" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> 454 CRISPR direct repeats DOE Joint Genome Institute genome assembly LANL Los Alamos MLST MLVA new sequencing technologies next generation sequencing Noblis PLAGUE Roche Santa Fe sequencing platforms SFAF software spacers Yersinia Pestis 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 24 Jul 2012 12:06:47 -0700 JGI 52156 at http://www.scivee.tv http://www.scivee.tv/node/52145 <p>Paul Keim on "Plague: A Highly Fit Clonal Pathogen Emerges and Shapes Human History" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> bacterial assembly Black Death DOE Joint Genome Institute Epidemiology genome LANL Los Alamos microbial genomes new sequencing technologies next generation sequencing Northern Arizona University pathogen Paul Keim PLAGUE Santa Fe sequencing sequencing platforms SFAF Yersinia Pestis 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 24 Jul 2012 09:50:30 -0700 JGI 52145 at http://www.scivee.tv http://www.scivee.tv/node/52061 <p>George Vacek on "Better computing for better bioinformatics" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Bioinformatics de novo assembly Department of Energy DOE Joint Genome Institute genome analysis genome assembly genome sequence Illumina LANL Los Alamos new sequencing technologies next generation sequencing read mapping Santa Fe sequencing platforms SFAF software Velvet 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Wed, 18 Jul 2012 15:44:11 -0700 JGI 52061 at http://www.scivee.tv http://www.scivee.tv/node/52059 <p>Maryke Appel on "Engineered polymerases enable novel sequencing applications" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div><p><a href="http://www.scivee.tv/node/52059">read more</a></p> Bioinformatics DOE Joint Genome Institute enzymes GC content genome Kapa Biosystems KAPA HiFi LANL Los Alamos methyl-seq new sequencing technologies next generation sequencing PCR Santa Fe sequence sequencing platforms SFAF uracil 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Wed, 18 Jul 2012 15:12:58 -0700 JGI 52059 at http://www.scivee.tv http://www.scivee.tv/node/52036 <p>Deacon Sweeney on "the Best Finish First: Sequence Finishing with Whole Genome Mapping" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> anotation Bioinformatics contigs Department of Energy DOE Joint Genome Institute genome assembly genome sequence LANL Los Alamos microbes new sequencing technologies next generation sequencing OpGen Santa Fe sequencing platforms SFAF software 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 17 Jul 2012 17:40:48 -0700 JGI 52036 at http://www.scivee.tv http://www.scivee.tv/node/52035 <p>Kashef Qaadri on "NGS for the Masses: Empowering biologists to improve bioinformatic productivity" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Bioinformatics biologists Department of Energy genome LANL Los Alamos new sequencing technologies next generation sequencing Santa Fe sequence sequencing platforms SFAF 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 17 Jul 2012 17:02:54 -0700 JGI 52035 at http://www.scivee.tv http://www.scivee.tv/node/52014 <p>Daniel Bozinov on "Challenges in Genomic Cloud Computing" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Bioinformatics cloud computing data compression Department of Energy DOE Joint Genome Institute genome genome sequence Illumina LANL Los Alamos Moore&#039;s Law new sequencing technologies next generation sequencing oncology pipeline Santa Fe sequence sequencing platforms SFAF 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 17 Jul 2012 11:47:42 -0700 JGI 52014 at http://www.scivee.tv http://www.scivee.tv/node/52009 <p>Jennifer Carter on "Beyond Basic Target Enrichment: New Tools to fuel your NGS Research" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Agilent Department of Energy DOE Joint Genome Institute genome sequence HaloPlex LANL MethylSeq new sequencing technologies next generation sequencing NGS PCR RNASeq Santa Fe sequencing platforms SFAF target enrichment 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 17 Jul 2012 11:27:51 -0700 JGI 52009 at http://www.scivee.tv http://www.scivee.tv/node/52002 <p>Peter Vallone on "Forensic DNA Standards for Next Generation Sequencing Platforms" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Bioinformatics Department of Energy DOE Joint Genome Institute forensic DNA genome sequence human identity Los Alamos National Institute of Standards and Technologies new sequencing technologies next generation sequencing NGS NIST Sanger Santa Fe sequencing platforms SFAF software standard reference materials 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 17 Jul 2012 10:46:53 -0700 JGI 52002 at http://www.scivee.tv http://www.scivee.tv/node/52001 <p>Thomas Callaghan on "NGS: Possible Applications for Forensic DNA Analysis" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Bioinformatics CODIS criminal investigations DNA database DOE Joint Genome Institute FBI forensic DNA genome LANL Los Alamos new sequencing technologies next generation sequencing PCR RFLP Sanger Santa Fe sequence sequencing sequencing platforms SFAF 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Tue, 17 Jul 2012 10:41:07 -0700 JGI 52001 at http://www.scivee.tv http://www.scivee.tv/node/51986 <p>Donna Muzny on "En route to the clinic: Diagnostic sequencing applications using the Ion Torrent" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Baylor Baylor College of Medicine Department of Energy DOE JGI Donna Muzny genome annotation genomics Informatics ion torrent LANL Los Alamos next generation sequencing Next Generation Sequencing technologies pipeline quality Santa Fe sequencing platforms software 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Mon, 16 Jul 2012 18:50:45 -0700 JGI 51986 at http://www.scivee.tv http://www.scivee.tv/node/51984 <p>David Jenkins on "Ion Torrent semiconductor sequencing allows rapid, low-cost sequencing of the human exome" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Bioinformatics Department of Energy DOE Joint Genome Institute EdgeBio exome genome sequence ion torrent LANL Los Alamos microbiome new sequencing technologies next generation sequencing pipeline Santa Fe sequencing sequencing platforms 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Mon, 16 Jul 2012 18:40:23 -0700 JGI 51984 at http://www.scivee.tv http://www.scivee.tv/node/51983 <p>Representatives from several next-generation sequencer manufacturers take part in a panel discussion at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> 454 assembly Bioinformatics DOE Joint Genome Institute finished sequence finishing genome genome annotation genome sequence Haley Fiske Illumina ion torrent Jim Knight LANL Life Technologies Los Alamos Michael Rhodes MiSeq new sequencing technologies next generation sequencing Pacific Biosciences PCR pipeline Roche Santa Fe SFAF SMRT DNA sequencing technology Steve Turner 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Mon, 16 Jul 2012 11:31:41 -0700 JGI 51983 at http://www.scivee.tv http://www.scivee.tv/node/51982 <p>Steve Turner's talk "Reveal the True Biology" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Bioinformatics Department of Energy DOE Joint Genome Institute genome genome sequence LANL Los Alamos methylome new sequencing technologies next generation sequencing Pacific Biosciences Santa Fe sequencing sequencing platforms SFAF single-molecule real-time SMRT software Steve Turner 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Mon, 16 Jul 2012 10:21:31 -0700 JGI 51982 at http://www.scivee.tv http://www.scivee.tv/node/51981 <p>Michael Rhodes on "using the Ion Torrent for de novo Sequencing" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> bacteria Department of Energy DOE Joint Genome Institute genome genome assembly genome sequence ion torrent LANL Los Alamos new sequencing technologies next generation sequencing quality Santa Fe sequence sequencing platforms software 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Mon, 16 Jul 2012 10:11:12 -0700 JGI 51981 at http://www.scivee.tv http://www.scivee.tv/node/51980 <p>Haley Fiske on "Improvements in Next-Generation Sequencing" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Bioinformatics Department of Energy DOE Joint Genome Institute HiSeq Illumina LANL Los Alamos MiSeq new sequencing technologies pipeline sample prep SFAF 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Mon, 16 Jul 2012 10:02:17 -0700 JGI 51980 at http://www.scivee.tv http://www.scivee.tv/node/51925 <p>Jim Knight on "454 Sequencing: The Road to the Future" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> 454 Department of Energy DOE Joint Genome Institute genome genome assembly genome sequence Illumina LANL Los Alamos microbial genomes next generation sequencing Roche Santa Fe sequencing platforms SFAF software transcriptome assembly 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Fri, 13 Jul 2012 10:41:50 -0700 JGI 51925 at http://www.scivee.tv http://www.scivee.tv/node/51917 <p>Joanne Mudge on "Phytophthora capsici - Loss of Heterozygosity (LOH): A Widespread Mechanism for Rapid Mutation" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> genome genome sequence Joann Mudge Los Alamos National Center for Genome Resources NCGR plant pathogen Santa Fe sequence SFAF 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Fri, 13 Jul 2012 09:38:03 -0700 JGI 51917 at http://www.scivee.tv http://www.scivee.tv/node/51915 <p>Tom Brettin on "Building the DOE Systems Biology Knowledgebase" (Kbase) at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> Argonne National Lab Berkeley Lab Brookhaven National Lab Cold Spring Harbor Laboratory cyberinfrastructure Department of Energy DOE Joint Genome Institute environments genome genomics Kbase metagenomics MG-RAST MicrobeOnline microbes Model SEED Oak Ridge National Lab RAST SEED sequence sequencing Systems biology 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Fri, 13 Jul 2012 09:22:26 -0700 JGI 51915 at http://www.scivee.tv http://www.scivee.tv/node/51913 <p>George Weinstock, associate director at the Genome Institute at Washington University, delivered the opening keynote "Towards the Perfect Genome Sequence" at the 2012 Sequencing, Finishing, Analysis in the Future Meeting held June 5-7, 2012 in Santa Fe, New Mexico.</p> <div class="og_rss_groups"><ul class="links"><li class="first last og_links"><a href="/node/51914" class="og_links">7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012</a></li> </ul></div> annotation assembly bacterial assembly DOE Joint Genome Institute finished sequence finishing genome genome annotation George Weinstock hybrid assembly Los Alamos microbial genomes new sequencing technologies Santa Fe sequencing sequencing platforms software Washington University 7th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 5-7, 2012 Fri, 13 Jul 2012 09:06:35 -0700 JGI 51913 at http://www.scivee.tv