GSC 12

GSC 12 Session II: Biodiversity

psterk1 — Thu, 23 Feb 2012 12:03:52 -0800

The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 (http://gensc.org/gc_wiki/index.php/GSC_12).

Robert Robbins & Neil Davies, "Welcome & Introduction to the session proceedings"
Renzo Kottmann, "DwC/MIxS: technical issues + proposed solutions”
John Deck, "TDWG meets GBWG"
Inigo San Gil, "LTER Use Cases”
Peter Dawyndt, "Microbial Earth Catalogue"
David Schindel, "CBOL meets GBWG"
Cynthia Parr, "EOL meets GBWG"
Eamonn O’Tuama, "GBIF meets GBWG”

GSC 12

GSC 12 Session IX: Keynote speech

psterk1 — Wed, 22 Feb 2012 08:10:38 -0800

The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 (http://gensc.org/gc_wiki/index.php/GSC_12).

Bicheng Yang (BGI Shenzhen, China) - BGI, Big Data and GigaScience

GSC 12

GSC 12 Session VIII cont'd: M5 Breakout group reports

psterk1 — Wed, 22 Feb 2012 07:52:12 -0800

The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 (http://gensc.org/gc_wiki/index.php/GSC_12).

M5 Breakout group reports

GSC 12

GSC 12 Session VIII: M5 - Towards interoperability

psterk1 — Wed, 22 Feb 2012 07:48:03 -0800

The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 (http://gensc.org/gc_wiki/index.php/GSC_12).

Discussion of requirements and path for the production of interoperability procedures, guidelines and data exchange specifications. Chair: Jeff Grethe (UCSD)

GSC 12

GSC 12 Session VII: The Evolution of a Community

psterk1 — Wed, 22 Feb 2012 07:28:06 -0800

The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 (http://gensc.org/gc_wiki/index.php/GSC_12).

The purpose of this session is to allow discussion time for brainstorming about the way forward for the GSC as a community. Chair: Dawn Field, CEH, UK.

GSC 12

GSC 12 Session VI: EnvO: deploying an environment ontology in the GSC

psterk1 — Wed, 22 Feb 2012 07:17:33 -0800

The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 (http://gensc.org/gc_wiki/index.php/GSC_12).

Barry Smith (U Buffalo) - An Introduction to Ontology as a Strategy for Data Integration
Barry Smith (U Buffalo) - The Structure of the Environment Ontology
Peter Dawyndt (Ghent University) - Microorganism-centered Computing

GSC 12

GSC 12 Session V: Developers Working Group - Standards supporting software development

psterk1 — Wed, 22 Feb 2012 06:21:39 -0800

The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 (http://gensc.org/gc_wiki/index.php/GSC_12).

Reports from discussions of various aspects of progressing GSC's software developments.

GSC 12

GSC 12 Session IV: MIxS

psterk1 — Wed, 22 Feb 2012 06:13:13 -0800

The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 (http://gensc.org/gc_wiki/index.php/GSC_12).

Lynn Schriml (University of Maryland) and Andreas Wilke (Argonne) - Extending MIxS for the Indoor Environment
Anjanette Johnston (NCBI GenBank) - Metadata and GenBank: Submission Challenges and New Features
Chris Hunter (ENA) - EBI, ENA, SRA, GSC, MIxS and EMG
Boyke Bunk (DSMZ) - MIxS-ing biodiversity data towards harmonised standards
Wolfgang Hankeln (MPI Bremen) - CDinFusion

GSC 12

GSC 12 Session III: Standards Organisations

psterk1 — Wed, 22 Feb 2012 04:34:20 -0800

The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 (http://gensc.org/gc_wiki/index.php/GSC_12).

Barry Smith (University of Buffalo): The World Wide Web Consortium (W3C)
Daniele Gerundino (ISO Strategic Adviser to the Secretary-General): ISO Standards
Martin Klopfer (OGC): The Open Geospatial Consortium (OGC)
Susanna Sansone (University of Oxford): BioSharing

GSC 12

GSC 12 Session II (cont'd): Biodiversity Reports

psterk1 — Wed, 22 Feb 2012 04:29:22 -0800

The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 (http://gensc.org/gc_wiki/index.php/GSC_12).

Reports from Biodiversity breakout groups

GSC 12

Welcome and background of GSC 12

psterk1 — Wed, 22 Feb 2012 02:06:43 -0800

The 12th Genomic Standards Consortium Meeting (GSC 12), held at The Max Planck Institute for Marine Microbiology, Bremen, Germany, September 28-30, 2011 (http://gensc.org/gc_wiki/index.php/GSC_12).

Dawn Field, "The Genomic Standards Consortium"
Pelin Yilmaz, "MIxS and Compliance Working Group"
Pier Luigi Buttigieg, "EnvO and Ontologies"
Wim de Smet, "Genomic Rosetta Stone"
Renzo Kottmann, "GCDML and Developer Working Group"
Jeff Grethe, "M5"
Robert Robbins, "GSC Biodiversity Working Group (GBWG)"

GSC 12