5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Roger Lasken on "Amplification of Genomic DNA from Single Cells using Multiple Displacement Amplification"

JGI — Fri, 09 Jul 2010 14:29:49 -0700

Roger Lasken of the J. Craig Venter Institute discusses the combined use of single cell genomics and metagenomics as well as methods for single-cell sequencing on June 4, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Rex Malmstrom on "Whole Genome Sequencing of Individual Bacterial Cells from the Ocean"

JGI — Fri, 09 Jul 2010 14:24:14 -0700

Rex Malmstrom of the DOE Joint Genome Institute discusses single-cell sequencing of Prochlorococcus on June 4, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Eric Pelletier on "Single Amplified Whole Genome Shotgun Applications"

JGI — Fri, 09 Jul 2010 14:16:34 -0700

Eric Pelletier of Genoscope discusses new sequencing technology developments to study a single cell at a large scale on June 4, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Joel Berendzen on "Grepping Life: A new Paradigm for Analyzing Metagenomic Data"

JGI — Fri, 09 Jul 2010 14:04:19 -0700

Joel Berendzen of Los Alamos National Laboratory discusses a phylogenetic method based on answering the question "What Would Google Do?" on June 4, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Joe Petrosino on "Sequencing, Assembly, and Analysis of Human Microbial Communities"

JGI — Fri, 09 Jul 2010 13:55:12 -0700

Joe Petrosino of Baylor College of Medicine discusses using next generation sequencing technologies to study human microbial communities associated with health and disease on June 4, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Nikos Krypides on "Analysis of metagenomic sequences: from megabases to terabases"

JGI — Fri, 09 Jul 2010 13:42:47 -0700

Nikos Krypides of the DOE Joint Genome Institute discusses metagenomics and the challenge of dealing with terabases of data on June 4, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Patrick Chain on "A meeting perspective and advances in standards"

JGI — Fri, 09 Jul 2010 12:24:21 -0700

Patrick Chain, a DOE JGI scientist at Los Alamos National Laboratory, looks back on previous SFAF meetings and gives an update on the genome standards first publicly proposed in 2009 on June 4, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

John Oliver on "Beyond Nanopores"

JGI — Fri, 09 Jul 2010 12:14:54 -0700

John Oliver of NABsys discusses implementing nanopore sequencing on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Saul Kravitz on "A Comprehensive Platform for NGS Data Analysis"

JGI — Fri, 09 Jul 2010 12:06:10 -0700

Saul Kravitz of CLC Bio discusses the company's Genomic Workbench and how it can be used with data from next generation sequencing platforms on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Mark Roskey on "Sample Prep, Workflow Automation and Advanced Nucleic Acid Fractionation for Next Generation Sequencing"

JGI — Fri, 09 Jul 2010 12:05:22 -0700

Mark Roskey of Caliper LifeSciences discusses how the company's technologies fit into the next generation sequencing workflow on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Todd Smith on "Increasing the Scale of Deep Sequencing Data Analysis with BioHDF"

JGI — Fri, 09 Jul 2010 11:56:25 -0700

Todd Smith of Geospiza discusses how BioHDF systems can be used with next generation DNA sequencing technologies on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Trevor Wagner on "Use of Optical Mapping to Aid in Assembly and Finishing of Human Microbiome Genome Projects"

JGI — Fri, 09 Jul 2010 11:48:05 -0700

Trevor Wagner of OpGen, Inc. discusses the use of optical mapping to validate the assembly of HMP genomes on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Jim Laugharn on "AFA-based DNA fragmentation"

JGI — Fri, 09 Jul 2010 11:38:41 -0700

Jim Laugharn of Covaris discusses a critical first step for the standardization of next gen sequencing on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Finishing Panel at SFAF

JGI — Fri, 09 Jul 2010 11:18:26 -0700

From left to right: Dibyendu Kumar of the University of Florida, Christian Buhay of Baylor College of Medicine, Andries van Tonder of Wellcome Sanger Trust Institute, Anna Montmayeur of the Broad Institute and Karen Davenport of Los Alamos National Laboratory at the Finishing forum on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Karen Davenport on "LANL Finishing"

JGI — Fri, 09 Jul 2010 10:52:56 -0700

Karen Davenport of Los Alamos National Laboratory discusses a high-throughput next generation genome finishing pipeline on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Andries van Tonder on "Finishing Using Next Generation Technologies"

JGI — Fri, 09 Jul 2010 10:00:06 -0700

Andries van Tonder of Wellcome Trust Sanger Institute discusses a pipeline for finishing genomes to the gold standard on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Christian Buhay on "Improved Microbe Assembly and Finishing using 454 8kb Libraries"

JGI — Fri, 09 Jul 2010 09:35:45 -0700

Christian Buhay from Baylor College of Medicine's Human Genome Sequencing Center discusses microbial genome finishing strategies on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Dibyendu Kumar on "Use of Optical Mapping in Bacterial Genome Finishing"

JGI — Fri, 09 Jul 2010 09:15:50 -0700

Dibyendu Kumar from the University of Florida discusses whole-genome optical mapping to help validate bacterial genome assemblies on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Rene Warren on "Sequencing the unrearranged human Immunoglobulin"

JGI — Fri, 09 Jul 2010 08:57:43 -0700

Rene Warren from Canada's Michael Smith Genome Sciences Centre discusses sequencing and finishing the IgH heavy chain locus on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Arvind Bharti on "The Medicago HapMap Project"

JGI — Thu, 08 Jul 2010 17:28:01 -0700

Arvind Bharti from the National Center for Genome Resources discusses resequencing 400 plant and bacteria genotypes on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Andrew Bradbury on "Towards experimental annotation of genes by high throughput sequencing"

JGI — Thu, 08 Jul 2010 17:08:13 -0700

Andrew Bradbury of Los Alamos National Laboratory discusses turning annotation into a sequencing pipeline on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Robert Edgar on "Usearch"

JGI — Thu, 08 Jul 2010 17:00:13 -0700

Robert Edgar from drive5.com discusses a method for "breaking through the BLAST barrier to high-throughput sequence analysis" on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Joann Mudge on "Phytopthora capsici"

JGI — Wed, 07 Jul 2010 13:07:30 -0700

Joann Mudge of the NCGR discusses the genome assembly of a polymorphic organism on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Jeff Martin on "Rnnotator assembly pipeline"

JGI — Wed, 07 Jul 2010 13:00:46 -0700

Jeff Martin of the DOE Joint Genome Institute discusses a de novo transcriptome assembly pipeline from short RNA-Seq reads on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Jim Knight on "Large Genome Assembly with 454 Data"

JGI — Wed, 07 Jul 2010 10:45:36 -0700

Jim Knight of Roche Diagnostics discusses bonobo and tomato assemblies, among other things, on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Jim Bristow delivers DOE JGI welcome remarks

JGI — Wed, 07 Jul 2010 10:35:13 -0700

Jim Bristow, Deputy Director of Programs at the DOE Joint Genome Institute, discusses the impact of advances in sequencing technologies on large genome centers on June 3, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Sequencing Centers Panel at SFAF

JGI — Tue, 06 Jul 2010 16:09:22 -0700

From left to right: Faye Schilkey of NCGR, Johar Ali of OICR, Darren Grafham of Wellcome Trust Sanger Institute, Donna Muzny of the Baylor College of Medicine, Bob Fulton of Washington University, Mike Fitzgerald of the Broad Institute, Jessica Hostetler of the J. Craig Venter Institute and Chris Daum of the DOE Joint Genome Institute discuss sequencing technologies, applications and pipelines on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Johar Ali on "Genomics at the Ontario Institute for Cancer Reserach"

JGI — Tue, 06 Jul 2010 15:55:09 -0700

Johar Ali of the Ontario Institute for Cancer Research discusses genomics and next-gen applications at the OICR on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Bob Fulton on "The Genome Center at Washington University"

JGI — Tue, 06 Jul 2010 15:47:09 -0700

Bob Fulton of Washington University discusses the sequencing platforms in use at this large scale genome center on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Donna Muzny on "NexGen Production - Sequencing and Analysis"

JGI — Tue, 06 Jul 2010 15:26:17 -0700

Donna Muzny of the Baylor College of Medicine Human Genome Sequencing Center discusses next generation sequencing platforms and evaluating pipeline performance on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Mike Fitzgerald on "Sequencing at the Broad"

JGI — Tue, 06 Jul 2010 15:18:58 -0700

Mike Fitzgerald of the Broad Institute discusses sequencing platforms and pipeline overviews on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Darren Grafham on "Using New Tech Data at the Wellcome Trust Sanger Institute"

JGI — Tue, 06 Jul 2010 14:39:06 -0700

Darren Grafham of the Wellcome Trust Sanger Institute discusses the three platforms currently in use for sequencing at the Institute on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Chris Daum on "An inside look at the JGI's Sequencing Operation"

JGI — Tue, 06 Jul 2010 14:31:32 -0700

Chris Daum of the DOE Joint Genome Institute discusses how the DOE JGI's Production Sequencing group optimizes the sequencer pipelines and assesses quality on the Production line on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Faye Schilkey on "The Genome Sequencing Center at NCGR"

JGI — Tue, 06 Jul 2010 14:20:44 -0700

Faye Schilkey from the National Center for Genome Resources discusses NCGR's research, sequencing and analysis experience on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Sequencing Technologies Panel at SFAF

JGI — Tue, 06 Jul 2010 14:14:45 -0700

From left to right: Steve Turner of Pacific Biosciences, Haley Fiske of Illumina, Jim Knight of Roche, Michael Rhodes of Life Technologies and Peter Vander Horn of Life Technologies' Single Molecule Sequencing group discuss new sequencing technologies and applications on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Haley Fiske on "New Applications and Sequencing Instrumentation"

JGI — Tue, 06 Jul 2010 13:29:45 -0700

Haley Fiske of Illumina discusses improvements to Illumina platforms and methods on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Clotilde Teiling on "454 -Investing in future generations"

JGI — Tue, 06 Jul 2010 13:08:53 -0700

Clotilde Teiling of Roche Applied Sciences discusses moving away from sequencing symbiotic environments on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Nikos Kyrpides on “The Future of Microbial Genomics”

JGI — Tue, 06 Jul 2010 11:41:49 -0700

Nikos Kyrpides, head of the Genome Biology group at the DOE Joint Genome Institute discusses current challenges in the field of microbial genomics on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Nicole Rosenzweig on “Data Management Requirements for the Rapid Identification and Characterization of Unknown Genomic Samples”

JGI — Tue, 06 Jul 2010 11:20:17 -0700

Nicole Rosenzweig of OptiMetrics discusses the development of informatics infrastructure for studying bacterial pathogens on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Neil Miller on “Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis”

JGI — Tue, 06 Jul 2010 11:01:51 -0700

Neil Miller, Deputy Director of Software Engineering at the National Center for Genome Resources, discusses a monozygotic twin study on June 2, 2010 at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Claire Fraser-Liggett on “Complex microbial communities: We’re not in Kansas anymore”

JGI — Tue, 06 Jul 2010 10:55:09 -0700

Claire Fraser-Liggett, Director of the Institute for Genome Sciences and professor at the University of Maryland School of Medicine, gives the June 2, 2010 keynote at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.

5th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: June 2-4, 2010

Mary Neu delivers "Los Alamos National Laboratory Overview"

JGI — Tue, 06 Jul 2010 10:42:27 -0700

Mary Neu, Associate Director for Chemistry, Life and Earth Sciences at Los Alamos National Laboratory, delivers opening remarks at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on June 2, 2010.