4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Patrick Chain on "Defining Genome Project Standards in a New Era of Sequencing"

JGI — Fri, 09 Oct 2009 10:35:58 -0700

Patrick Chain of the DOE Joint Genome Institute gives a talk on behalf of the International Genome Sequencing Standards Consortium on the need for intermediate genome classifications between "draft" and "finished" at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 27, 2009.

Featuring DOE Joint Genome Institute researchers

Jim Laugharn on "Optimizing DNA Shearing"

JGI — Thu, 11 Jun 2009 16:01:04 -0700

Jim Laugharn of Covaris, Inc. discusses DNA shearing for next generation sequencing at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 28, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Jim Knight on "What We've Been Doing/Dealing with Since Last Year"

JGI — Thu, 11 Jun 2009 12:16:22 -0700

Jim Knight of Roche Diagnostics discusses Roche's projects at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 28, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Patrice Milos on "Enabling True Biology with Single Molecule Sequencing"

JGI — Thu, 11 Jun 2009 11:43:01 -0700

Patrice Milos of Helicos BioSciences discusses single molecule sequencing at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 27, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Larry Kedes on "The $10M Archon Genomic X PRIZE and Data Validation"

JGI — Thu, 11 Jun 2009 11:34:11 -0700

Larry Kedes from the X PRIZE Foundation and the University of Southern California speaks at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 28, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Todd Smith on "BioHDF: Toward Scalable Bioinformatics Infrastructures"

JGI — Thu, 11 Jun 2009 11:27:59 -0700

Todd Smith from Geospiza speaks at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 29, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Valerie Barbe on "Relative positioning of scaffolds"

JGI — Wed, 10 Jun 2009 15:58:44 -0700

Valerie Barbe of CEA/Genoscope discusses scaffolding and new sequencing technologies at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 27, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

David Mead on "Next Generation DNA Polymerases & Reverse Transcriptases"

JGI — Wed, 10 Jun 2009 15:47:58 -0700

David Mead of Lucigen Corporation discusses polymerase development, Yellowstone and sequencing at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 28, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Vincent Magrini on "Sequence Enrichment Applying RainDance Technology"

JGI — Wed, 10 Jun 2009 15:36:13 -0700

Vincent Magrini from The Genome Center at Washington University in St. Louis talks about his group's use of RainDance Technology at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 28, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Jarret Glasscock on "Throughput to Insight... and Tackling the Messy Bits Between"

JGI — Wed, 10 Jun 2009 14:59:54 -0700

Jarret Glasscock of Cofactor Genomics talks about short-read platforms at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 28, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

M. Sofi Ibrahim on "Whole-Genome Resequencing"

JGI — Tue, 09 Jun 2009 17:43:09 -0700

M. Sofi Ibrahim of the United States Army Medical Research Institute for Infectious Diseases discusses viral hemorrhagic fevers at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 27, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Darren Grafham on "Sequencing and Finishing Pooled BAC clones with New Sequencing Technologies"

JGI — Tue, 09 Jun 2009 17:13:48 -0700

Darren Grafham of the Wellcome Trust Sanger Institute speaks at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 27, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Haley Fiske on "Next Generation Sequencing"

JGI — Tue, 09 Jun 2009 17:05:48 -0700

Haley Fiske of Illumina discusses the company's Genome Analyzer at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 27, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Michael Rhodes on "SOLiD Finishing - High Throughput Sequencing, Assembly and Analysis"

JGI — Tue, 09 Jun 2009 16:55:09 -0700

Michael Rhodes of Applied Biosystems discusses the SOLiD System at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 27, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Tim Harkins on "The 8 day challenge for 8 genomes"

JGI — Tue, 09 Jun 2009 16:40:33 -0700

Tim Harkins of Roche Diagnostics talks about what he calls "The Edwards & Eisen Challenge" at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 27, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Adam Briska on "A Software System for Validating and Orienting Sequence Contigs Using Optical Maps"

JGI — Tue, 09 Jun 2009 16:27:19 -0700

Adam Briska from OpGen, Inc. speaks at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 27, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Sante Gnerre on "ALLPATHS: Assembling Large Genomes with Short Illumina Reads"

JGI — Tue, 09 Jun 2009 14:40:28 -0700

Sante Gnerre from the Broad Institute speaks on the challenge of developing high quality assemblies of large genomes using short reads at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 28, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Sergey Koren on "Celera Assembler and Automated Finishing"

JGI — Tue, 09 Jun 2009 14:32:43 -0700

Sergey Koren from The J. Craig Venter Institute speaks at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 28, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Niranjan Nagarajan on "Towards the $1000 genome"

JGI — Tue, 09 Jun 2009 14:23:12 -0700

Niranjan Nagarajan from the University of Maryland discusses the impact of new technologies on finishing at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 28, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Shanmuga Sozhamannan on "To 'Finish' or not to 'Finish' - the $64K question in Genomics"

JGI — Mon, 08 Jun 2009 09:40:20 -0700

Shanmuga Sozhamannan of the Biological Defense Research Directorate at the Naval Medical Research Center discusses how next generation sequencing technologies can be applied to clinical and biothreat situations at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 28, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

New Generation Sequencing Technology Panel at SFAF - Part II

JGI — Mon, 08 Jun 2009 09:25:18 -0700

From left to right: Haley Fiske of Illumina Inc., Steve Turner of Pacific Biosciences, Michael Rhodes of Applied Biosystems, Patrice Milos of Helicos Biosciences and Tim Harkins of Roche Diagnostics answer questions in a forum moderated by Bob Fulton at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 27, 2009. Part 2 of 2.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

New Generation Sequencing Technology Panel at SFAF - Part I

JGI — Mon, 08 Jun 2009 09:17:48 -0700

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Joann Mudge on "Medicago trunculata Resequencing of 384 Lines"

JGI — Mon, 08 Jun 2009 09:06:14 -0700

Joann Mudge from the National Center for Genome Resources speaks at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 29, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

David Gordon on "Consed 19.0, Crossmatch Adapted for Solexa and 454 Reads"

JGI — Mon, 08 Jun 2009 09:00:08 -0700

David Gordon from the University of Washington speaks at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 29, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Shannon Dugan on "Finishing at BCM-HGSC"

JGI — Mon, 08 Jun 2009 08:53:57 -0700

Shannon Dugan from the Human Genome Sequencing Center at Baylor College of Medicine speaks at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 28, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Jon Armstrong on "Performance Comparison of Two Genome Partitioning Platforms"

JGI — Mon, 08 Jun 2009 08:45:08 -0700

Jon Armstrong from the Genome Center at Washington University in St. Louis School of Medicine speaks at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 29, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Cliff Han on "Prescreening Illumina Data Results in High-Quality Genome Polishing"

JGI — Thu, 04 Jun 2009 17:25:40 -0700

Cliff Han of the DOE Joint Genome Institute at Los Alamos National Laboratory, talks about modifying their bacterial genome sequencing process to accommodate new sequencing technologies at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 28, 2009.

Featuring DOE Joint Genome Institute researchers

Amrita Pati on "GenePRIMP: Improving Microbial Gene Prediction Quality"

JGI — Thu, 04 Jun 2009 17:15:07 -0700

Amrita Pati of the DOE Joint Genome Institute's Genome Biology group talks about a computational pipeline that evaluates the accuracy of gene models in genomes and metagenomes at different stages of finishing at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 29, 2009.

Featuring DOE Joint Genome Institute researchers

Victor Markowitz on "IMG Systems for Comparative Analysis of Microbial Genomes and Metagenomes"

JGI — Thu, 04 Jun 2009 16:52:34 -0700

Victor Markowitz, head of the Biological Data Management and Technology Center at Lawrence Berkeley National Laboratory, talks about the Integrated Microbial Genomes system housed at the DOE JGI at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 29, 2009.

Featuring DOE Joint Genome Institute researchers

Miriam Land on "Automated Microbial Genome Annotation"

JGI — Thu, 04 Jun 2009 16:38:42 -0700

Miriam Land of the DOE Joint Genome Institute at Oak Ridge National Laboratory gives a talk on the current state and future challenges of moving toward automated microbial genome annotation at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 29, 2009.

Featuring DOE Joint Genome Institute researchers

Alla Lapidus on "New technology drafts: production and improvements"

JGI — Thu, 04 Jun 2009 16:29:13 -0700

Alla Lapidus, head of the DOE Joint Genome Institute's Finishing group, gives a talk on how the DOE JGI's microbial genome sequencing pipeline has been adapted to accommodate next generation sequencing platforms at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 28, 2009.

Featuring DOE Joint Genome Institute researchers

Deanna Church on "Tools for Managing and Comparing Assemblies"

JGI — Wed, 03 Jun 2009 10:03:01 -0700

Deanna Church from the National Center for Biotechnology Information speaks at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 28, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Steve Turner on "Single Molecule Real Time DNA Sequencing"

JGI — Wed, 03 Jun 2009 09:51:47 -0700

Steve Turner of Pacific Biosciences talks about SMRT DNA sequencing at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 27, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Jessica Hostetler on "Human Microbiome Finishing"

JGI — Wed, 03 Jun 2009 09:44:15 -0700

Jessica Hostetler from The J. Craig Venter Institute speaks at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 27, 2009.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Evan Eichler on “Sequencing Complex Genomic Regions” - Part II

JGI — Tue, 02 Jun 2009 12:34:46 -0700

Evan Eichler, Howard Hughes Medical Investigator at the University of Washington, gives the May 28, 2009 keynote speech at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM. Part 2 of 2.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Evan Eichler on “Sequencing Complex Genomic Regions” - Part I

JGI — Tue, 02 Jun 2009 12:27:36 -0700

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Eric Green on "Fulfilling the Promise of a Sequenced Human Genome" - Part II

JGI — Tue, 02 Jun 2009 12:22:28 -0700

Eric Green, scientific director of the National Human Genome Research Institute (NHGRI), gives the opening keynote speech at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM on May 27, 2009. Part 2 of 2.

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Eric Green on "Fulfilling the Promise of a Sequenced Human Genome" - Part I

JGI — Tue, 02 Jun 2009 12:16:12 -0700

4th Annual Sequencing, Finishing, Analysis in the Future Meeting in Santa Fe, NM: May 27-29, 2009

Owen White on “A Common Framework for Multiple Sources of Bacterial Annotation”

JGI — Mon, 01 Jun 2009 17:12:21 -0700

Owen White, professor of epidemiology and preventive medicine at the University of Maryland School of Medicine and a researcher at the University of Maryland Institute for Genome Sciences, gives the May 29, 2009 keynote speech at the "Sequencing, Finishing, Analysis in the Future" meeting in Santa Fe, NM.