Computational Lab - Prof. Cristian Coarfa (2009)
Computational Lab - Prof. Cristian Coarfa (2009)
by: ralanharris
|
February 24, 2009
An introduction to computational methods for analyzing ChIP-Seq data by Cristian Coarfa. This was presented as a lab...
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Tags
- annotation
- antibodies
- array data analysis
- array hybridization
- BED format
- Bioinformatics
- CEAS annotation server
- cell treatment
- chip
- CHIP-Seq
- Christian Coarfa
- chromatin IP
- chromatine immunoprecipitation
- chromosome
- computational lab
- control sample
- cpg islands
- crosslinking
- data interpretation
- Database
- discovery rate
- disease outcome predictors
- DNA methylation
- DNA purification
- enhancer
- epigenic transcirption regulation
- features
- fold enrichment
- genes
- Genoboree
- genome
- genome size
- genomics
- graphs
- Harvard LIU Lab
- high volume sequencing
- histone modification
- hypothesis generation
- length
- logarithms
- MACS
- massive parallel DNA sequencing
- mDIP-chip/seq
- microarray
- miRNAs
- model-based analysis
- motifs
- peak detection
- positive-negative peak ratio
- probe
- promoter
- Python application
- r-script
- read alignment
- result interpretation
- results
- reverse crosslink
- Seq
- sequence analysis
- sonication
- statistics
- T-sample
- TF
- Treatment
- visualization
