Metagenomics 2008 Day 1 Panel Discussion: A Community Vision

submitted by: dougramsey

The first day at Metagenomics 2008 is discussed in a Q & A panel session at the end of the day.

Extending MIGS/MIMS to the Description of Ribosomal RNA Sequences

submitted by: dougramsey
With the MIGS/MIMS specifications the Genomic Standards Consortium has finished the groundwork to enrich our genome and metagenome collections with contextual data. Now, it is time to consider whether these standards could be applied ‘as is’ in the short-term, and ‘with modification/extension’ in the longer-term to any genetic marker sequence retrieved from the environment. To move for ward and leverage existing interest in the community the proposal for MIENS, the ‘Minimum...

The Environment Ontology: Linking Environmental Data

submitted by: dougramsey
Norman Morrison, University of Manchester Every biological specimen that is collected or sampled — whether for a museum collection, for epidemiological studies, for population studies, for ecological research, for research into evolution, biodiversity or sustainability, indeed any biological research — comes from a particular habitat where particular physical conditions prevail. How ever, at present there is no accepted semantic standard for describing the environment from which these...

Metadata Capture in the IMG/IMGm: Getting Scientists to Contribute

submitted by: dougramsey

Metadata Capture in the IMG/IMGm: Getting Scientists to Contribute - Victor Markowitz, Lawrence Berkeley National Lab

The Genomes Online Database (GOLD): The Value of a Comprehensive Metadata Collection

submitted by: dougramsey

The Genomes Online Database (GOLD): The Value of a Comprehensive Metadata Collection - Nikos Kyrpides, Joint Genome Institute

Efficient Metagenomics Data Processing: Pitfalls and Solutions

submitted by: dougramsey
Nikos Kyrpides, Joint Genome Institute Co-authors: Kostas Mavrommatis, Natalia Ivanova Metagenomics has emerged as a powerful tool for exploration of the functional capabilities of microbial communities regardless of the ability of their members to grow in pure culture. However, little is known for the efficacy of the methods used to process these datasets. Further more, sequencing of environmental genomic DNA usually results in large, highly fragmented datasets representing a significant...